Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq476 150 5e-32 seq265 127 5e-25 >seq476 Length=182463 Score = 150 bits (166), Expect = 5e-32 Identities = 263/378 (70%), Gaps = 10/378 (3%) Strand=Plus/Minus Query 7849 ACCGACATGGTGGCCACATCGTCAATGCTCAGCTCGCCGGTCTGGCCAGTGAGTTCCAGC 7908 |||||||||||||| ||||| || | | ||| ||||||||| ||| || ||||| Sbjct 126782 ACCGACATGGTGGCAACATCATCGAGGGCCAGGCCGCCGGTCTTGCCGGTTTCCTCCAGT 126723 Query 7909 TCCTGGATCTCTTCATCCTCCAGGACGAGCATTTCGAAGAGCTTCGACTGGCTGTCAATG 7968 |||| | | || || || || || ||||||||||||||||| || ||| || | ||| Sbjct 126722 TCCTCCACTTGGTCGTCGTCGAGAACAAGCATTTCGAAGAGCTTGGATTGGGTGCCGATG 126663 Query 7969 GCCTTCGTCAAAGTGGCGTTGCTACCGAGCGCA----GAGAATTTGGTCGCAGCGTCCAT 8024 || | ||||||| ||| ||| || |||| ||||| || || || | ||| Sbjct 126662 GCTTCCGTCAAA-TGG---TGCGACGTCGCGCCATTTGAGAACTTCACAGCGGCCTGCAT 126607 Query 8025 GAAGCGGAAGGCAACTGTGCGCTCAAGTCCCAACGCATTCAGTCGCTCGATAAAGCTG-C 8083 ||| || ||||| || | || | |||| | | | ||| || | || ||| | Sbjct 126606 GAAACGTTTCGCAACGCTGTGGTCGATGCCCAGCACCTCCAGGCGGGGCAGGAA-CTGAC 126548 Query 8084 CATGGATGCATGCCGACTTGAGCACTTGCAGCCCACGCCCCACTTCAAGGCACGCCTCTA 8143 | || || || ||||||||| || || || || |||||||||||||| || | Sbjct 126547 CGTGCTCACAGGCTTGCTTGAGCACCGCAAGACCGCGACCAACTTCAAGGCACGCTTCCA 126488 Query 8144 CGCTGCGGCGCATGTTGGCGGCGATGTCGCGCTGGATCAGGTCTGGGTCCGTGCAATCGG 8203 | || ||||||||||| || ||||||||||| ||||| || || || ||||| |||| Sbjct 126487 CCGACCGACGCATGTTGGCCGCAATGTCGCGCTGAATCAGATCCGGATCGGTGCAGTCGG 126428 Query 8204 CCGGTAGTTGATAGCCCA 8221 | || ||| |||||||| Sbjct 126427 CAGGCAGTGAATAGCCCA 126410 Score = 116 bits (128), Expect = 9e-22 Identities = 375/560 (67%), Gaps = 48/560 (9%) Strand=Plus/Plus Query 15211 GAACCGTCCGGCAAGTGGTTCGCCGATTTGACCCGGTACGGCACCGACGTCGCCGAGTAC 15270 |||||||| |||| ||||||||||| ||||||| ||||| ||| ||| ||| ||| Sbjct 137418 GAACCGTCGGGCACCTGGTTCGCCGACCTGACCCGCTACGGGGTGGACCTCGTCGAATAC 137477 Query 15271 ACCATCGACTGCGAACCCGGCATCGCTCGCCCCAAGAAGTACTGGTGACGACC-ATGGGG 15329 ||| |||| ||| | ||||||||||| || ||| |||||||||| ||| | |||| Sbjct 137478 ACCGTCGATTGCCAGCCCGGCATCGCGCGGCCCGTGAAGTACTGGA-ACGGCTGATGGCA 137536 Query 15330 CGGAA-ATCA---TCGATCTCCCGGCTACCGGACCAGGTCCGGGCCTACATCGAGGG-GC 15384 | | | || |||| ||| ||| ||||| | |||||| || | ||| | || Sbjct 137537 CCGCGCAGCAAGGTCGA-CTC---GCTGCCGGAAGACGTCCGGCGCTGGCTTGAGCGTGC 137592 Query 15385 GCCTGGCCGATGGCCGGATGACCCTGG--ACGAGCTGATCGCGGACCTGCAGGCGCAGTT 15442 || || |||| || | | | | || ||||| | | | |||| ||| | Sbjct 137593 GC-TGACCGACAGCGGCTT--CTCGGGCTACGAGGCGCTGGAGGACATGC--------TA 137641 Query 15443 CCCGAGCCAGGCCGAGGCCGGCGAGCTGCCCAGCCGTGCGGCCGTGCATCGCTACGGCCA 15502 | ||| | ||| | | || || | || || ||||| | || ||||| ||||| Sbjct 137642 CGCGA-CAAGGGCTACGC----GATCAGCA-AGA-GTGCGA---TTCACCGCTATGGCCA 137691 Query 15503 GAAGCTGGAGCGACGGCTGGCGGCAATTCGTGCCAGCACCGAGGCGGC---CAAGCTGAT 15559 | | | || || ||| | || || || |||||||||||||| || || ||||| Sbjct 137692 GCGGATCGAACGTCGGTTCGCAGCGATCAAGGCCAGCACCGAGGCTGCGCGCATGCTGA- 137750 Query 15560 CCGTGCCCAGGCCGGCGACGACCTGGACGCACGCAGCGAGGCGCTGACGGCGATGATCCA 15619 ||| | |||| |||||||| ||| || || |||||| ||| ||| || | || Sbjct 137751 CCGAGGGT--GCCGCCGACGACCAGGATGCCCGATCGGAGGCGGTGATCGCGCTGGTGCA 137808 Query 15620 GTCCGAGCTGTTCGAGTCGATCATCTCCCTGCAGGAGGCTGGTGATGAAGAGAT---GGA 15676 | | ||| | ||||| | ||| | | |||||||||| | |||||||| ||| Sbjct 137809 GACGGAGATCTTCGACACCATCGTGAACATGCAGGAGGCCAGCTCCGAAGAGATCTCGGA 137868 Query 15677 CCCGGCCGATCGTGTCGGACTGCTG-GCGTCTGCGGCAAAGAACATCGCGACGCTGACGC 15735 | || || || |||| || || ||| || || ||||||||||| || ||||||| Sbjct 137869 C---GCAGAGCGCCTCGGCATGATGAGCGAA-GCCGCCAAGAACATCGCCACACTGACGC 137924 Query 15736 GCTCCAGCGTCACGCTGAAG 15755 || ||||||| ||||| ||| Sbjct 137925 GCGCCAGCGTAACGCTCAAG 137944 Score = 86.0 bits (94), Expect = 2e-12 Identities = 275/421 (65%), Gaps = 12/421 (3%) Strand=Plus/Minus Query 2389 ACACCCCCGCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACCCGCTCCT 2448 |||| |||| | ||| || ||||| | | ||||| ||| || | || | || | | Sbjct 132881 ACACAGCCGCCAGATCCAGCGGAATCGCGTTCCACTGGCCGGCGTTCTCGCCGCGGACGT 132822 Query 2449 GGATACGCACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCCTGCATTG 2508 || ||||||||| || ||||| | | | || || | ||| |||||||| | Sbjct 132821 AGAAACGCACGTAAACCGCGGTGCCGCAGGCTTCGATGCTGTCCCGGATCGCCTGCATGG 132762 Query 2509 CACGCTGCCAACGTTCG---TCATCGATCTGCAGGCGGCGCAGGGCAAGCACG-CTGCCG 2564 | ||||||| |||| || ||||| | |||||| |||| | |||||| |||||| Sbjct 132761 CCTGCTGCCA---TTCGGGGTCGTCGATGTCCAGGCGCAGCAGCTCGAGCACGGCTGCCG 132705 Query 2565 GTACGGATGTTCCCTGCTTGGT--CCACGCGGAACGCATCGTTGATCAGCGTGATGACCT 2622 | ||| | ||| |||| | || |||||| || | | ||||| | || | Sbjct 132704 -TCTTGATCTGCCC--CTTGCTATCCGTGCGGAAAGCGCGATCCACCAGCGCGCGGATGT 132648 Query 2623 CCGCGCGAGCGCCTTCTGTCCATTCGTGGAGGCACTCGTCGATCAACGCCTTGGCCGCCT 2682 | | |||||||| |||| | || ||| | || ||||| ||||||||| || | Sbjct 132647 GGGGGTTGGCGCCTTCGCTCCAGCGGATGATGCAGTTGTTGATCAGCGCCTTGGCGGCTT 132588 Query 2683 GCAGGCGCTCGTCGAAGGCGATGTTGTCGGCCATGGCCCGAATGACCTTGTAGCGACCGT 2742 | || ||| ||||| ||| ||||| |||||| | || |||||| |||| Sbjct 132587 CGATGCCTTCGGTGAAGGTGATCCGCTCGGCGTAGGCCCGGACGATCTTGTACTCGCCGT 132528 Query 2743 CGAAGCTGACCAGGGAGGCGTTGCCCTTCTTGCCACCTACCTTCGCCTGGTACTGCTCGG 2802 || || || || | |||||||||||| ||| || | |||| ||| ||| | |||| Sbjct 132527 CGTAGGTGGTCACCTGGACGTTGCCCTTCTCGCCGCCGATCTTCACCTCGTAGCGTTCGG 132468 Query 2803 C 2803 | Sbjct 132467 C 132467 >seq265 Length=448903 Score = 127 bits (140), Expect = 5e-25 Identities = 306/455 (67%), Gaps = 21/455 (5%) Strand=Plus/Minus Query 16105 GAGAAGTCTCGCCGCACCGGTCTGACCTGGGCCGAAGCCGGGCGCAACGTGATCAATGCC 16164 ||||| |||||||||||| | ||||||||||| || | ||| || | | ||| Sbjct 60901 GAGAAAAGTCGCCGCACCGGCATCACCTGGGCCGAGGCGGCAGACAATGTACTGACCGCC 60842 Query 16165 GCCAAGCC-GCGGCGCCGAGGTGGCTGCAACACCTTCTACGTCGGCAGCAAGCAGGAGAT 16223 || | | || | | || || || ||| || ||| | | | ||| ||||| || Sbjct 60841 GCTTCGGCAGCATCAGCTGGGGGGATG-AACGTCTATTACATTGCCTACAACCAGGACAT 60783 Query 16224 GGCGCTGGAGTACATCGCCGCCTGCGCGTTGTTCGCCCGCGCCTTCAACGAGCTGGCCGA 16283 | | ||||||| ||| || ||||| ||| || || ||||||||| | |||| Sbjct 60782 GACCGTGGAGTATATCCAGGCGTGCGCCATGTGGGCGCGGGCCTTCAACTACGCGGCCAG 60723 Query 16284 GGCTGACGTCTACGAGCAGACCTTCTGGGACGAAGGGAAGAAGG-----AAGAGATCCTG 16338 || || || ||| | |||||||| || |||||||| || | ||| | Sbjct 60722 CGC-GA----TA-GAGGAAGGGTTCTGGGAGGA--GGAAGAAGACGACAAACATATCAAG 60671 Query 16339 ACCTACATGATCCGCTTCCCGAAGTCGGGG---CGGAAGATCCAGGCCCTGAGCAGCCGG 16395 ||||||| ||||| |||||| | ||||| ||| | | ||| ||| ||| ||| Sbjct 60670 ACCTACACCATCCGGTTCCCGGATGCGGGGTTTCGGGTGGT---GGCGCTGTCCAGTCGG 60614 Query 16396 CCGAGCAACCTGCGCGGCCTGCAGGGCGACGTGGTGATCGACGAGGCGGCGTTCCACGAG 16455 || ||||||||| || | |||||| | | || || || || || |||||||| || Sbjct 60613 CCTTCCAACCTGCGTGGTCGTCAGGGCATCATCGTTATTGATGAAGCCGCGTTCCATGAA 60554 Query 16456 TCCCTGGAGGAACTGCTGAAGGCCGCCCTGGCGCTGACGATGTGGGGTAACAAGGTCCGC 16515 ||| ||| || ||||||||||| |||||| || ||| ||||| |||||| ||| Sbjct 60553 CAGTTGGGGGAGCTACTGAAGGCCGCGCTGGCGATGCTGATTTGGGGCGGCAAGGTGCGC 60494 Query 16516 CTGATCAGCACCCACAACGGCGTCGACAACCCGTT 16550 | ||| |||||| || || ||||| |||||||| Sbjct 60493 GTCATCTCCACCCATAATGGTGTCGAAAACCCGTT 60459 Score = 96.9 bits (106), Expect = 9e-16 Identities = 207/304 (68%), Gaps = 14/304 (5%) Strand=Plus/Minus Query 21210 CAGGAGATCGCCGCGACCTACGATCCGGCGCTCAGCGAGGCCCCTCTCGTCATCGGTCAC 21269 |||| ||| || || | || ||||||||||| ||| ||||| | || |||| ||| Sbjct 56399 CAGGCGATGGCGGCAGCGTATGATCCGGCGCTGCACGAAGCCCCGATTGTGGTCGGCCAC 56340 Query 21270 CCCAAGCTCAATGCACCGGCCTACGGCTGGGCCAAGGGCCTGGAGGTGCGCG---AGGGC 21326 || || | | | || |||||||| |||| || |||| | || || ||| | Sbjct 56339 CCGAAAACCGACGACCCCGCCTACGGTTGGGTAAAAAGCCTCGCGGCCACCGGCAAGGAC 56280 Query 21327 ATGCTCTATGCCGAGCCGCACCAGGTGGTCCCCGAGTTCGCAGAA---GCCGCGAACCGC 21383 ||||| ||||||||||| ||||| | ||| | ||| |||| | || |||| Sbjct 56279 ATGCTG---GCCGAGCCGCATCAGGTTGACCCGGCGTTTAAAGAACTGGTCGATAACCAT 56223 Query 21384 AAGATGTACAAGAAGCGCAGC-GCTTCGGTGTACCTGCCGGACTCGCCAGGCAACCCGGT 21442 | | | || || | | || || | | ||| |||||||| || |||||||| || Sbjct 56222 C-GCTTCAAAAAAATCTCTGCCGCCT---TTTACGCCCCGGACTCACCGGGCAACCCTGT 56167 Query 21443 TCCGGGCAAGCACTACCTGCGCCATATCGGCTTCCTCGGTGCCGTGCCGCCGGCCATCAA 21502 ||| ||| |||||||||||||| | || || || |||||| |||||| ||| |||| Sbjct 56166 TCCCGGCGTCTACTACCTGCGCCATGTGGGTTTTCTGGGTGCCCAGCCGCCCGCCGTCAA 56107 Query 21503 GGGC 21506 |||| Sbjct 56106 GGGC 56103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126568849800870