Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq888 259 5e-64 seq4721 91.5 1e-13 >seq888 Length=58548 Score = 259 bits (286), Expect = 5e-64 Identities = 290/383 (76%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 24282 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 24341 || ||||||||| || || | || || || | |||||| |||||||| |||||||| Sbjct 22459 CACGATGTCGTCGAACACAACAGAGGGGTCGTTGACGATGTTGCGGATGATGTGGGTGTA 22518 Query 24342 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 24401 ||||| |||||||| || || |||||||| ||||| | ||| || ||||| | | Sbjct 22519 CGAGCGCGAGTGGATCGTTTCGGAAAACGCCCAGGTCTCGATCCACGTCTCCAGC-TCGG 22577 Query 24402 GTCG-GACACGATCGGGAGCAGAACTGC--GTTCGGCCCACGGCCCTGTACAGAATCCAG 24458 | | ||||| | ||| || |||| | ||| || | || ||||| | || ||||| Sbjct 22578 GCAGCGACACCAGCGGCAG--GAACGCCATGTTGGGACTGCGCCCCTGGATGGAGTCCAG 22635 Query 24459 AAGGATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCAT 24518 || ||||||| |||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 22636 CAGCGTCTGGTATTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGGTCCGGCAGGTTCTG 22695 Query 24519 GTAGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTG 24578 ||| |||| ||||| | || | || ||||||||||| ||||||||||| | || || Sbjct 22696 GTAATCGAGCCGGTCCTGCGTGATGTCTACTTCTTCCGGGCGCCAGAAGAAGGAGAGCTG 22755 Query 24579 CTTCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGG 24638 ||| ||||||||||||||||| ||| || ||||||||||| ||||| | |||||| Sbjct 22756 CTTTTCGATCAGCTTCTCGAAGATGGGGTACTTCTGCTGGTCGTAGCGTGCCACGTTCAC 22815 Query 24639 TGTCTCGCCGAGGAACATCGGCT 24661 | || ||||| |||||| |||| Sbjct 22816 CGGCTGGCCGAAGAACATGGGCT 22838 Score = 116 bits (128), Expect = 4e-21 Identities = 210/300 (70%), Gaps = 14/300 (5%) Strand=Plus/Plus Query 25738 ACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAAC---CAGTGTACGGACA 25794 || || |||| ||| || || | ||| ||| | ||||| || ||| || |||||| Sbjct 23678 ACGGGGTAGTCCTGGTAGTCGAGCAGGGCATCGAGCGCACGCACGATCAG-GT-CGGACA 23735 Query 25795 GGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACAGAGTACAC 25854 || | | || || || ||| |||| | ||| ||||||| ||| ||||| || ||| Sbjct 23736 GGTTTTC-CAGCTCATCGAGCGATTCCAGCGCGCCCAGGTTGAAGGCCGACAGCGTGCAC 23794 Query 25855 AGGGCCACTTCCCCCGGGTCGTTCGGATCATTAATGTCCGTAATCGGATGTGTCGGCAGG 25914 || || | || || ||| |||||| || || | | ||| | || ||||| Sbjct 23795 AGCGCGATCTCGCC------GTTTTCATCATTGATATCGTTCAGCGGCTTGGTGGGCAGC 23848 Query 25915 GCGATTTCCATGCACAGGTTGGACTGTTTCACCGGGGCCTGTTCGGGGTCGAACGGGCTA 25974 ||| |||||||||||||||||||| ||| || |||| | | |||||||||||| Sbjct 23849 AGGATCTCCATGCACAGGTTGGACTGGCGCACGGGTGCCTTCTGCGCGTCGAACGGGCTG 23908 Query 25975 TTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAATACGGCCTGT-CTGAGAACGCTCCTG 26033 | |||||||||||||| |||| ||| | ||| || ||||| || ||| | |||||||| Sbjct 23909 TGCGTGTTGCAGTGGTCCACGTTCTGGATGTAGATGCGGCCGGTGCTG-GCGCGCTCCTG 23967 >seq4721 Length=367317 Score = 91.5 bits (100), Expect = 1e-13 Identities = 200/297 (67%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 16724 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGGG 16783 ||||| || || ||||| | ||| |||||||| | || ||||||| ||||| ||| Sbjct 17025 GCGATGGCGTTGATGGTGAGGTCGCGGCGGGCGAGGTCTTCTTCGAGCGTCACCGACGGG 17084 Query 16784 CTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAGG 16843 | | | |||| || ||| || | | || ||||||||||||||||| Sbjct 17085 TCGGTGTGGAACACGAAGCCGGCGTAGCCCGGCGCGGTCTTGCGCTCGGTACGGGCCAGC 17144 Query 16844 GCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCTCG 16903 ||||| || || | ||| || || ||| | || ||||| | ||||| ||| | Sbjct 17145 GCGTATTCCTCGTGGGTGCGCGGGTGGAGGAAGACCGGGAAATCCTTGCCGACCGGCTTG 17204 Query 16904 AAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCTTTG 16963 |||| || | | | |||| |||||| |||||| || || |||| ||||| ||| Sbjct 17205 TAGCCTTCGGCGAGGAGGTTTTCGGGGGTGGCGCCGACGACCACCCAGTCCCGGTCCTTG 17264 Query 16964 CTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGAC-CAGATAGATTTTCAT 17019 | | ||| | |||||| ||||||| ||||| ||||| ||| ||||||| ||| Sbjct 17265 ACCGGCAGACCGAGCAGTTCGTCGCGGATGGCGCCACCGACGCAG-TAGATTTCCAT 17320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478985916606240