Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq885 93.3 2e-14 >seq885 Length=61233 Score = 93.3 bits (102), Expect = 2e-14 Identities = 210/309 (68%), Gaps = 20/309 (6%) Strand=Plus/Minus Query 5818 GAGTACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT- 5876 ||| ||||| | ||| || | |||||| || || || || ||||||| ||||| | Sbjct 59235 GAGCACGACATCACCTTCGGCGTCGGCCCGGCCGGCACCGGCAAGACCTATCTGGCGGTG 59176 Query 5877 -CCACCACGGCCTGCGCCT----GCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACC 5931 ||| | ||| |||| || |||| || |||| ||| ||||| ||||| Sbjct 59175 GCCAGCGCGGTGGATGCCTTCGAGCGGGAGCACGTGGAG------CGCATCGTCCTCACC 59122 Query 5932 CGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAG 5991 || || || || ||||| | ||| ||| || |||||||||||| | ||| | ||||| Sbjct 59121 CGTCCGGCGGTCGAGGCCGGCGAGCGGCTGGGTTTCCTGCCCGGCGATCTGGCCCAGAAG 59062 Query 5992 ATGGCACCCTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGC-CCGAC--G 6048 | | ||||| || |||| | |||||| || ||||||| | ||| |||| Sbjct 59061 GTCGACCCCTATCTGCGCCCGCTCTACGACGCGCTGTACGACCTGATGGGCTTCGACCGC 59002 Query 6049 ATGACGAAGCGCCTCCTCGAGTCGCGCCAGC-TGGAGGTCGCCCCGCTGGCCTACATGCG 6107 | || ||| ||| ||||| |||| | || | ||| |||| |||||||||| |||||| Sbjct 59001 GTCACCAAG---CTCTTCGAG-CGCGGCTGCATCGAGATCGCGCCGCTGGCCTTCATGCG 58946 Query 6108 AGGCCGGAC 6116 || || || Sbjct 58945 CGGGCGAAC 58937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191477182962560