Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq888 125 8e-24 >seq888 Length=58548 Score = 125 bits (138), Expect = 8e-24 Identities = 271/404 (67%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 18308 TGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCT---GTG 18364 |||| ||||| |||||| | ||||| ||||| || | ||||||||| |||| | | Sbjct 24557 TGCCTACCCCCATTATGTCCGGCGTGCGCACGCCCATGCGCCAGTTC---AGCTCGTGCG 24501 Query 18365 TTAAGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAA 18424 | ||| ||| || |||||||| || || |||| | || ||| |||| | Sbjct 24500 TGCTGATCGAATGCGACGACAGCCTGGATGGCATCAACGCCACCACCAGCGCCATCGTCA 24441 Query 18425 ATTATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAA 18484 | || | | |||||||| ||||| || || | || || || ||||| | || | Sbjct 24440 AGTACGTGTCGCAGCGCGCTGGCATCGGCATCAATGGCGGCCGTATCCGTGCCGTGGGCA 24381 Query 18485 GTCAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCC 18544 | || | || || |||| | ||||| || | || |||| || |||| Sbjct 24380 GCGAAATCCGGGGCGGCGAAGCGCAGCACACGGGCTGCCTGCCCTTCTTCAAGATGTTCC 24321 Query 18545 AGACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATT 18604 || |||| || || || || || || |||||||| || || || ||||| || |||| | Sbjct 24320 AGGCTGCCGTCAAGTCCTGCTCGCAGGGCGGTGTGCGGGGAGGGGCGGCCACGCTGTTCT 24261 Query 18605 ATCCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTG 18664 | || ||||||| || ||| | ||| |||| | || || || || ||| ||||| | Sbjct 24260 ACCCCCTGTGGCACCTGGAAGTGGAATCGCTGCTGGTGCTCAAGAACAACCGCGGTGTGG 24201 Query 18665 ATGAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAAT 18708 | |||||||||||||| || | || |||||| | || |||||| Sbjct 24200 AGGAAAACCGCATTCGCCATTTGGACTATGGTGTGCAGATCAAT 24157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582701349060600