Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028809.1 Length=58637 Score E Sequences producing significant alignments: (Bits) Value seq538 239 2e-58 >seq538 Length=154069 Score = 239 bits (264), Expect = 2e-58 Identities = 423/615 (69%), Gaps = 70/615 (11%) Strand=Plus/Plus Query 4529 CGCGC-GACCCAGGCGGCGGCGACCATGCGCATGGGCGGCGGCATCGGCTACGACTTCTC 4587 ||||| | ||||| | || | |||||||||| ||||||||| |||||||||||||||| Sbjct 117463 CGCGCTGGCCCAGTCCGCCGAGACCATGCGCCGCGGCGGCGGCGTCGGCTACGACTTCTC 117522 Query 4588 CACCCTGCGCCCCAAGGGCGACCTCAT---CGTCAAGCTGCAGTCCCGCAGCTCCGGCCC 4644 | || | ||||||||||||| | | || || | ||||| | ||||||||| Sbjct 117523 CTCCATCCGCCCCAAGGGCGCGATGGTGCGCGGCACCC---AGTCCAACGCCTCCGGCCC 117579 Query 4645 CATCTCCTTCATGGAGATTTTCGACGCAGTCTGCCGCTGCACGTCC--TCGTCCGGCCAC 4702 |||||| |||| | |||||| |||| | |||| || ||||| | Sbjct 117580 GGTCTCCTACATGCGCGTGTTCGACCGCTCCTGCGA--GACCGTCGAATCCGCCGGCTCC 117637 Query 4703 CGGCGTGGCGCGCAGATGGGCGTCCTGCGCATCGACCACCCCGACATCTTCGACTTCGTC 4762 || || ||||| ||||||||||| |||||| ||||||||| |||||| || ||| || Sbjct 117638 CGCCGCGGCGCCCAGATGGGCGTGCTGCGCTGCGACCACCCGGACATCGAGGAATTCATC 117697 Query 4763 CGCGCCAAGCAGAACGA-GACCTTCCTGCGCGGCTTCAACATCTCCATCGCCGTCACGGA 4821 | ||||||| | ||| ||||| | | ||||||| ||||||||||||| || || Sbjct 117698 CACGCCAAGGACCACGGCGACCTCAC----CAACTTCAACGTCTCCATCGCCGTGACCGA 117753 Query 4822 CGAGTTCATGCGGGCC----AAGC-----GCGACGG------------CAAGCCCT---- 4856 | |||||||| |||| |||| |||||| |||| || Sbjct 117754 CCTGTTCATGCAGGCCGTCGAAGCCGATGGCGACGTGGAACTCGCCCACAAGGCCGAGCC 117813 Query 4857 -TCCAGCTGAAGTTCGGCGGCCG-CGTCTACC---GCGA------------GGTGGACCC 4899 |||||| | |||||||| || ||||| |||| |||| ||| Sbjct 117814 GTCCAGCGACATCAAGGCGGCCGGCGGCTACCAGCGCGACGACGGGCTGTGGGTGTACCG 117873 Query 4900 CAA------------CGAGCTGTGGGACGCGGTCATGCGCTCCACCTGGGACTGGGCCGA 4947 ||| ||| |||||||| ||||||||||||||||| ||| ||||| Sbjct 117874 CAAGGTGCGCGCCCGCGACCTGTGGGATCAGGTCATGCGCTCCACCTACGACCACGCCGA 117933 Query 4948 GCCGGGCGTCCTGTTCATCGACCGCATCAACGAGATGAACAACCTCCACTACTGCGAGAC 5007 |||||| |||||||| |||||||||| ||| || |||||||| ||||||||||||| Sbjct 117934 ACCGGGCATCCTGTTCCTCGACCGCATGAACAAGGACAACAACCTTTACTACTGCGAGAC 117993 Query 5008 CATCGCGGCGACCAACCCGTGCGGCGAGCAGCCGCTGCCACCGTTCGGCGCCTGCCTGCT 5067 ||||| ||| |||||||| |||| ||||||||| ||||| | | |||| |||| || Sbjct 117994 CATCGAGGCCACCAACCCCTGCGCCGAGCAGCCCCTGCCGTCCTACGGCTGCTGCTGCCT 118053 Query 5068 CGGCTCCTTCAACCT 5082 ||||| ||||||| Sbjct 118054 GGGCTCGATCAACCT 118068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187506207293166