Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq4651 223 1e-53 seq377 176 1e-39 >seq4651 Length=474197 Score = 223 bits (246), Expect = 1e-53 Identities = 197/246 (80%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||||||| | ||||||||| ||||| ||||||||||||||||| |||||||| | Sbjct 333812 GAAGTCGATGTCGAAGTCGGGCATCGACACCCGCTCGGGGTTCAGGAAGCGCTCGAACAG 333753 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 ||| ||| | || |||||||||||||||||| || ||||||| |||||||| || Sbjct 333752 CAGCGCGTAGGCGAGCGGATCGAGGTCGGTGATCTTCAGCGAGTAGGCCACCAGCGAGCC 333693 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 || | ||||| ||||| || || ||| ||||||||| | ||||||||| |||||| Sbjct 333692 CGCGCCGGAGCCCCGCCCCGGCCCCACCGGCACGCCGTTGTTCTTGGCCCACTGGATGAA 333633 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 40413 ||| || |||| |||||||||| || ||||||||||||||||| |||| ||||| | Sbjct 333632 GTCCGCCACGATCAGGAAGTAGCCGGGAAAGCCCATCTGGATGATGGTGTCAGTCTCGAA 333573 Query 40414 CTGGAG 40419 || ||| Sbjct 333572 CTTGAG 333567 Score = 154 bits (170), Expect = 5e-33 Identities = 441/668 (66%), Gaps = 40/668 (6%) Strand=Plus/Minus Query 38848 CTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGATCTCGCTCTCCCCGTTCGGGGT 38907 |||||||||| |||||||||| ||| ||| |||||||| || | || | || Sbjct 335114 CTCGCCCACGCCCTTCACGGCGCCCAGGCCGTAGCGGATCGTCTTCGCGTCGGTGGGCAC 335055 Query 38908 GAAGGAGCTGTTCGAGACCGACACGTCGGGCGGCAGGACCCGCAGGCCCATGCGCCGCG- 38966 |||| | || |||| | |||||| |||||||| ||| | ||| || ||| Sbjct 335054 GAAGCGGTAGTCCGAGGCGTTCACGTCCGGCGGCAGCACCGCGATGCCGTTGGCGAGCGT 334995 Query 38967 --CCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTC---GTCGCCCACCGAGGTGAGCAC 39021 | ||| || | | || | | | | | ||||| |||| || | |||| Sbjct 334994 GTCTTCGTAGAAGATCTTGATCGTGTCGGTGTTGTCCAGGTCGGCCGACATGGTG----- 334940 Query 39022 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 39081 ||||||||| | |||| || || | ||| || |||| ||| |||||| || | Sbjct 334939 -GCCGCCATGAAGGCGGCGCAGTGGTAGGCCTTGAGCCACGCGGTGTGGTAGGTGACCAC 334881 Query 39082 CCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAG--GGTACGAGCACG 39139 | |||| || || | ||||| |||||||||| ||||| ||||||| ||| | || Sbjct 334880 CGCGTAGGCGGCCGTGTGCGACTTGTTGAAGCCGTACTCGGCGAACTTGGTC--ATCAGA 334823 Query 39140 TCCCACACCGCCTGGATG-GCGCTG--TCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGG 39196 || | | | || | | |||| | || |||||| || ||| || || | Sbjct 334822 TCGAAGAGCTGCTCGGCGAGCGCCGGGTC---GTAGCCCTTCTGGCGGGCGCCGGCGGCG 334766 Query 39197 AAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGC 39256 | | || || | |||||||| |||||||||||||||||||||| ||||| |||||| Sbjct 334765 ATGGTCTCGCGGTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATCGCCCGGCGCAGC 334706 Query 39257 AGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCC 39316 | |||||| ||| ||| ||||||| ||| |||||| | || | |||||||||| Sbjct 334705 ATGTCGGCGCCGCCGAGGGTGTAGCCGCCGATGATCTGGGAGATCTGCATCACCTGCTCC 334646 Query 39317 TGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATCTCCCGCAGGGGCTCCTCCACCTCG 39376 ||||| | ||| | |||||| || || ||| ||||| | | | || Sbjct 334645 TGGTACACGATCACCCCGTAGGTGGGCGACAG--------GCAGGCGGT----GAGATCC 334598 Query 39377 GGGTG--AATCGGCGAGATCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTCGTGTGTG 39434 ||||| | | | | ||| |||||||| || |||||||| ||| || |||| Sbjct 334597 GGGTGGAAGTAGTC--GATGGCCTGCTGGCCCTTCTTCCGCAGGATGAAG-TCGTCCACC 334541 Query 39435 A-GCCAACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAG 39493 | || ||||| ||| ||||||||||| ||||||| ||||| |||||| |||||| Sbjct 334540 ATCCCCGAGCCCAGCGGGCCCGGACGGTAGAGCGCGAGCACGGCGATGATGTCTTCGAAG 334481 Query 39494 TTGTCGGG 39501 |||||| Sbjct 334480 CGGTCGGG 334473 >seq377 Length=293092 Score = 176 bits (194), Expect = 1e-39 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 ||||||||| || | ||||||||| ||||| ||||| ||||||||||| || ||||| | Sbjct 77917 GAAGTCGATATCGAAGTCGGGCATCGACACCCGCTCCGGGTTCAGGAAGCGTTCGAACAG 77976 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 ||| ||| |||| || || || ||||| || || | ||||||| ||||||||||| Sbjct 77977 CAGCGCGTAGGCCAGCGGGTCCAGATCGGTAATGCCCAACGAGTAGGCCACCAGCGAACC 78036 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 ||| |||| || || || || || ||| |||||||| | |||||||||| |||||| Sbjct 78037 GGCACCCGAACCCCGGCCCGGCCCCACCGGTACGCCGTTGTTCTTGGCCCAGTTGATGAA 78096 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGAT 40398 ||||| |||| |||||||| ||||| |||||||| ||||| Sbjct 78097 ATCGGCCACGATGAGGAAGTAACCGGGGAACCCCATCTGAATGAT 78141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160397338742718