Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq4651 179 1e-40 seq377 149 2e-31 >seq4651 Length=474197 Score = 179 bits (198), Expect = 1e-40 Identities = 189/246 (77%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||||||| | ||||||||| || || ||||| ||||||||||| |||||||| | Sbjct 333812 GAAGTCGATGTCGAAGTCGGGCATCGACACCCGCTCGGGGTTCAGGAAGCGCTCGAACAG 333753 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 ||| ||| | || || || |||||||||||| || | ||| || |||||||||| Sbjct 333752 CAGCGCGTAGGCGAGCGGATCGAGGTCGGTGATCTTCAGCGAGTAGGCCACCAGCGAGCC 333693 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | ||||| ||||| || || ||| ||||||||| | ||| ||||| |||||| Sbjct 333692 CGCGCCGGAGCCCCGCCCCGGCCCCACCGGCACGCCGTTGTTCTTGGCCCACTGGATGAA 333633 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGG-AACCCCATCTGGTTGATCATGTCGATCTCGT 39319 ||| || |||| |||||||| | |||| || ||||||||| |||| |||| ||||| Sbjct 333632 GTCCGCCACGATCAGGAAGTA-GCCGGGAAAGCCCATCTGGATGATGGTGTCAGTCTCGA 333574 Query 39320 ACTCGA 39325 ||| || Sbjct 333573 ACTTGA 333568 Score = 143 bits (158), Expect = 9e-30 Identities = 437/665 (66%), Gaps = 34/665 (5%) Strand=Plus/Minus Query 37755 CTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGT 37814 |||||||||| |||||||||| ||| ||| |||||||| | | | || | || Sbjct 335114 CTCGCCCACGCCCTTCACGGCGCCCAGGCCGTAGCGGATCGTCTTCGCGTCGGTGGGCAC 335055 Query 37815 GAAGGAGGAGTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGC---GCCT 37871 |||| | ||| |||| | |||||| |||||||| ||| | ||| || || | Sbjct 335054 GAAGCGGTAGTCCGAGGCGTTCACGTCCGGCGGCAGCACCGCGATGCCGTTGGCGAGCGT 334995 Query 37872 GCACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTC---GTCGCCCACCGAGGTGAGCAC 37928 | ||| || | | || | | | | | ||||| |||| || | |||| Sbjct 334994 GTCTTCGTAGAAGATCTTGATCGTGTCGGTGTTGTCCAGGTCGGCCGACATGGTG----- 334940 Query 37929 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 37988 ||||||||| | |||| || || | ||| || |||| ||| |||||| || | Sbjct 334939 -GCCGCCATGAAGGCGGCGCAGTGGTAGGCCTTGAGCCACGCGGTGTGGTAGGTGACCAC 334881 Query 37989 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAG--GGTACGAGCACG 38046 |||| || || | ||||| |||||||||| ||||| ||||||| ||| | || Sbjct 334880 CGCGTAGGCGGCCGTGTGCGACTTGTTGAAGCCGTACTCGGCGAACTTGGTC--ATCAGA 334823 Query 38047 TCCCACACC-GCCCGGATGGCAGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAA 38105 || | | | || ||| || ||| |||||| || || || || || Sbjct 334822 TCGAAGAGCTGCTCGGCGAGC-GCCGGGTCGTAGCCCTTCTGGCGGGCGCCGGCGGCGAT 334764 Query 38106 GTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAG 38165 | || || | |||||||| | |||||||||||||||||||||| || || || || | Sbjct 334763 GGTCTCGCGGTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATCGCCCGGCGCAGCAT 334704 Query 38166 GTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTG 38225 |||||| ||||||||||| ||| | | |||||| | || | |||||||||||| Sbjct 334703 GTCGGCGCCGCCGAGGGTGTAGCCGCCGATGATCTGGGAGATCTGCATCACCTGCTCCTG 334644 Query 38226 GTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGG 38285 ||| | ||| | |||| |||| || || ||| |||| | || || Sbjct 334643 GTACACGATCACCCCGTAGGTGGGCGACA-------GGCAGGCGG-----TGAGATCCGG 334596 Query 38286 GTGGATCGGCGT-GATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGA-G 38343 ||||| | || ||| ||||||| || ||||| || ||| | || |||| | | Sbjct 334595 GTGGA-AGTAGTCGATGGCCTGCTGGCCCTTCTTCCGCAGGATGAAG-TCGTCCACCATC 334538 Query 38344 CCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAACTGG 38403 ||| ||||| ||| ||||||||||| ||||||| ||||| |||||| ||||| || Sbjct 334537 CCCGAGCCCAGCGGGCCCGGACGGTAGAGCGCGAGCACGGCGATGATGTCTTCGAAGCGG 334478 Query 38404 TCCGG 38408 || || Sbjct 334477 TCGGG 334473 >seq377 Length=293092 Score = 149 bits (164), Expect = 2e-31 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 ||||||||| || | ||||||||| || || ||||| ||||||||||| || ||||| | Sbjct 77917 GAAGTCGATATCGAAGTCGGGCATCGACACCCGCTCCGGGTTCAGGAAGCGTTCGAACAG 77976 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 ||| ||| | | |||||||| ||||| || || | | ||| || ||||||| || Sbjct 77977 CAGCGCGTAGGCCAGCGGGTCCAGATCGGTAATGCCCAACGAGTAGGCCACCAGCGAACC 78036 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | || || || || || || ||| |||||||| | ||| |||||| |||||| Sbjct 78037 GGCACCCGAACCCCGGCCCGGCCCCACCGGTACGCCGTTGTTCTTGGCCCAGTTGATGAA 78096 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGAT 39305 ||||| |||| ||||||||| |||||||||||||| |||| Sbjct 78097 ATCGGCCACGATGAGGAAGTAACCGGGGAACCCCATCTGAATGAT 78141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159706177788174