Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028931.1 Length=55108 Score E Sequences producing significant alignments: (Bits) Value seq538 205 3e-48 >seq538 Length=154069 Score = 205 bits (226), Expect = 3e-48 Identities = 814/1262 (65%), Gaps = 102/1262 (8%) Strand=Plus/Plus Query 3839 GCTTCATGCCCGCCGGCCGCATCCAGTCCGCCATCGGCTCCGGCAAGAACACCACCCCCT 3898 ||||| ||||||||||||||||| | |||||| |||| || | | |||| | Sbjct 117333 GCTTCGTGCCCGCCGGCCGCATCAACTCCGCCGCCGGCACCAACCTCGCCGCCACGCTGA 117392 Query 3899 ACAACTGCTACGTCTCG---------GGCACCATCGCCGACAGCTACGTCGACGGCGAGG 3949 |||||||| ||| | | | | ||| |||| | |||||||||| Sbjct 117393 TCAACTGCTTCGTGCAGCCGGTGGGCGACTCGATCACCGAA---TCCGTCGACGGCCGCT 117449 Query 3950 GCTCGATCATGGAGCGCGCCA-CCCAGGCAGCCGCGACCATGCGCATGGGCGGCGGCATC 4008 || ||| | | ||||| ||||| | |||| |||||||||| ||||||||| || Sbjct 117450 GCGGCATC-TACACCGCGCTGGCCCAGTCCGCCGAGACCATGCGCCGCGGCGGCGGCGTC 117508 Query 4009 GGCTACGACTTCTCCACCCTGCGCCCCAAGGGCGACCTGAT---CGTCAAGCTGCAGTCC 4065 ||||||||||||||| || | ||||||||||||| || | || || |||||| Sbjct 117509 GGCTACGACTTCTCCTCCATCCGCCCCAAGGGCGCGATGGTGCGCGGCA---CCCAGTCC 117565 Query 4066 CGCAGCTCCGGCCCCATCTCCTTCATGGAGATTTTCGACGCGGTCTGCCGCTGCACGTC- 4124 | ||||||||| |||||| |||| | |||||| || || || | |||| Sbjct 117566 AACGCCTCCGGCCCGGTCTCCTACATGCGCGTGTTCGAC-CGCTCCTGCG-AGACCGTCG 117623 Query 4125 -CTCGTCCGGCCACCGCCGTGGCGCCCAGATGGGCGTCATGCGCATCGACCACCCCGACA 4183 || ||||| |||||| ||||||||||||||||| ||||| ||||||||| |||| Sbjct 117624 AATCCGCCGGCTCCCGCCGCGGCGCCCAGATGGGCGTGCTGCGCTGCGACCACCCGGACA 117683 Query 4184 TCTTCGAGTTCATCCACGCCAAGCAGAACGAGCACTTCCTGCGCGGCTTCAATATCTCCA 4243 || || ||||||||||||||| | ||| | ||| | |||||| |||||| Sbjct 117684 TCGAGGAATTCATCCACGCCAAGGACCACG---GCGACCTCACCAACTTCAACGTCTCCA 117740 Query 4244 TCGCCGTCACCGACGAGTTCATGGA----GTGCAAGC-----GGGACG--------GC-- 4284 ||||||| |||||| ||||||| | || |||| | |||| || Sbjct 117741 TCGCCGTGACCGACCTGTTCATGCAGGCCGTCGAAGCCGATGGCGACGTGGAACTCGCCC 117800 Query 4285 ---AAGCCG----TTCCAGC----TGAAGTGGGGCGG---------GCGC---------- 4314 | |||| |||||| | ||| || ||| |||| Sbjct 117801 ACAAGGCCGAGCCGTCCAGCGACATCAAGGCGGCCGGCGGCTACCAGCGCGACGACGGGC 117860 Query 4315 -----GTCTACCGCGAGGTCGACCCCAACGAGCTGTGGGACGCTGTCATGCGCTCCACCT 4369 || |||||| |||| | || ||| |||||||| |||||||||||||||| Sbjct 117861 TGTGGGTGTACCGCAAGGTGCGCGCCCGCGACCTGTGGGATCAGGTCATGCGCTCCACCT 117920 Query 4370 GGGACTGGGCCGAGCCGGGCGTCCTGTTCATCGACACCATCAACCGCATGAACAATCTCT 4429 ||| ||||| |||||| |||||||| ||||| ||| ||| ||||| || | Sbjct 117921 ACGACCACGCCGAACCGGGCATCCTGTTCCTCGACCGCATGAACAAGGACAACAACCTTT 117980 Query 4430 GGTACTGCGAGGAGATTGCGGCCACCAACCCGTGCGGCGAGCAGCCGCTGCCTCCGTTCG 4489 ||||||||| || | |||||||||||| |||| ||||||||| ||||| | | || Sbjct 117981 ACTACTGCGAGACCATCGAGGCCACCAACCCCTGCGCCGAGCAGCCCCTGCCGTCCTACG 118040 Query 4490 GCGCCTGCCTGCTTGGCTCCTTCAACCTGGTGCGCTATCTGCGGCGCGACATGGTTGGCT 4549 || |||| || ||||| ||||||| || || || | || | | | | Sbjct 118041 GCTGCTGCTGCCTGGGCTCGATCAACCTCACGCTGTACGTGAAGGACGCCTTCTCCGACA 118100 Query 4550 GGTC---CTTCGACTGGTGCCAGC-TCGCCGAGGACATCCCGGTCGTCG-TGCGCGCCAT 4604 | | |||||||| ||| || ||| | || ||| | | ||| | ||| | Sbjct 118101 AGGCCAGCTTCGACT-TCGCCGGCTTCGGCAAGACCAT-CGAAACCTCGATCCGCATGCT 118158 Query 4605 GGACAACGTGGTCGACCGGGCCCGCTACCCGTTGCCGCAGCAGGA-GCAGGAGGCGAGGT 4663 ||||||||| |||| ||| || ||| | |||||| | || | || | | || Sbjct 118159 CGACAACGTGCTCGAAGCCACCCACTGGCCGCTCGAACAGCAGCACGCCGAAGCCCA-GT 118217 Query 4664 CCAAACGCCGGATGGGCCTGGGTGTGACCGCCCTGGCGAACGCG--GGCGAGGCCCTGGG 4721 |||| ||||| | ||||| || | |||| ||| | |||||| ||| | | ||| | Sbjct 118218 CCAAGCGCCGCGTCGGCCTCGGCTTCACCGGCCTCGGCAACGCGCTGGCCATG--CTGCG 118275 Query 4722 CCACCCCTACGGCTCGCCCGGCTTCCTGGACTTCACCCGCCGCGT-GCTGACGATGGTGC 4780 || | ||||| | | || || | | || | | | | || | ||| Sbjct 118276 CCTGCGCTACGACACCGACGAAGCCCGCGCGATGGCCACCAGGATCTCCGAATA-CATGC 118334 Query 4781 GCGACGAGTCCTACCGCGCGTCGGCCCTGTTGGCCCATGAGAAGGGCTCCTTCCCGCTCT 4840 ||||| ||||||| | || || | | | ||| | || ||| |||||||||| | Sbjct 118335 GCGACCAGTCCTATCTGGCCTCCGTCGAACTCGCCAAGGAACGCGGCGCCTTCCCGCTGT 118394 Query 4841 TCGAGGCCGAGCAGTACCT-GGAGTCCGC--CTTCGTGAAGACCCTGCCCGAGGACGTCC 4897 || | ||||| | ||||| | | || ||||| | |||||| | || || Sbjct 118395 TCAACGCCGATCTCTACCTCTCCGGCGGCAACTTCGCCTCGCGCCTGCCGGCCGAGGTGA 118454 Query 4898 GCGAGATGATCGCCGAGCTGGGCATCCGCAACTCCCACCTGACCTCCATCGCGCCGACCG 4957 || | |||| | ||| ||| | |||||||| |||||| ||||||||| || |||| Sbjct 118455 AGGACAAGATCCGCAAGCACGGCCTGCGCAACTCGCACCTGCTCTCCATCGCCCCCACCG 118514 Query 4958 GCACCATCAGCCTG---TGCGCCGACAACGTGAGCTCCGGCCTGGAGCCCGTGTTCTCCT 5014 |||||||||||||| | ||||||||||| | |||| | ||||| |||||| | Sbjct 118515 GCACCATCAGCCTGGCCTTCGCCGACAACGCCTCCAACGGCATCGAGCCGCCGTTCTCAT 118574 Query 5015 AC 5016 || Sbjct 118575 AC 118576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176214045216380