Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq4721 87.8 2e-12 seq4651 84.2 3e-11 >seq4721 Length=367317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/179 (71%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 145364 AAGCAGGTTGGCGCGGATTTCCCGGTGTTCCTTGACGCACAAAACCGCGA---ACACGCA 145420 |||| ||| ||| |||||||||||| ||||| || | | | || ||| | |||| Sbjct 17203 AAGCCGGTCGGCAAGGATTTCCCGGTCTTCCTCCACCCGCGCACCCACGAGGAATACGCG 17144 Query 145421 CTCGCCCGGATCGAACGCAAGACCGGCGAAGGCTACAAGGGATTCGAATGCGCCTTTGAC 145480 || ||||| | ||| |||||||||| |||||| || |||| | | | ||| Sbjct 17143 CTGGCCCGTACCGAGCGCAAGACCGCGCCGGGCTACGCCGGCTTCGTGTTCCACACCGAC 17084 Query 145481 ACGTCGATCACCATCGAACAAGACCTGATGCGCCGCGATCTTACCATCAACGCCATGGC 145539 ||||| | || ||||| ||||||| |||||||| || |||||||||||||| || Sbjct 17083 CCGTCGGTGACGCTCGAAGAAGACCTCGCCCGCCGCGACCTCACCATCAACGCCATCGC 17025 >seq4651 Length=474197 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 181466 GAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGCTGATT 181525 ||||||||| ||||||||||||||||| |||| ||||| ||| || ||||||| Sbjct 349784 GAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAGATGTCGGCGCTGCGCTGATA 349843 Query 181526 CCAAAGGCAGGACAGTTTGTCATTGCGAACATAGAACTGGAATCCGTAGTGGCACGGCGG 181585 |||| ||||| ||| | | | || ||||||||||| |||||| ||||| Sbjct 349844 GAGCTGGCACGACAGCTTGCCGTCGGCCACGTAGAACTGGAACAGCGCGTGGCAGGGCGG 349903 Query 181586 CAAAGCCATTAGATCGACCGCGCCGACATTCCAAGCCGAGACCATATGACGACGGCTGAG 181645 || ||||| | || || || | ||||| ||||| || || || || ||| | Sbjct 349904 CAGGGCCATGCGGTCCACGTCGGCCGGGTTCCAGGCCGACACGATGTGGCGGCGGGAGTC 349963 Query 181646 AGGATCATTCTTGATGGTCACGATGACGTCAATGATCTGATCGATG 181691 || | ||||||| | | |||||| | |||||| |||||| Sbjct 349964 CGGGTTCTTCTTGAGCGCCTCGATGAGCTGGCCGATCTGGTCGATG 350009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661314274261560