Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq4651 183 1e-41 seq377 145 2e-30 >seq4651 Length=474197 Score = 183 bits (202), Expect = 1e-41 Identities = 276/384 (72%), Gaps = 14/384 (4%) Strand=Plus/Minus Query 39375 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGT--TGCG-GGCCTTGATCCTGC 39431 ||||| ||| ||||||||| || |||| || | || | || |||| ||| ||| Sbjct 333951 AGGGCAGGTCGAGCACGCGGCCCACGTCGCGCACCACGGCCTTCGAGGCC---ATCGTGC 333895 Query 39432 CGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCA 39491 || | || |||||||| ||| ||| ||||||| |||| ||||| ||||| Sbjct 333894 CGAAGGTGGCGATCTGGCTCACCGCGTCCTTGCCGTAGCGCTCGCGCACGTATTCGATCA 333835 Query 39492 CGTCGCCACGGCGACGGTCATCG---AAGTCGATGTCCACGTCGGGCATGGAGACGCGCT 39548 || || | ||| ||| | | ||||||||||| | ||||||||| || || |||| Sbjct 333834 CG-CGGTA--GCGGTTGTCCTGGCAGAAGTCGATGTCGAAGTCGGGCATCGACACCCGCT 333778 Query 39549 CAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCC 39608 | ||||||||||| |||||||| | ||| ||| | || || || |||||||||||| Sbjct 333777 CGGGGTTCAGGAAGCGCTCGAACAGCAGCGCGTAGGCGAGCGGATCGAGGTCGGTGATCT 333718 Query 39609 CGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACAC 39668 || | ||| || |||||||||| || | ||||| ||||| || || ||| ||| | Sbjct 333717 TCAGCGAGTAGGCCACCAGCGAGCCCGCGCCGGAGCCCCGCCCCGGCCCCACCGGCACGC 333658 Query 39669 CGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGG-AACCCC 39727 |||| | ||| ||||| ||||||||| || |||| |||||||| | |||| || ||| Sbjct 333657 CGTTGTTCTTGGCCCACTGGATGAAGTCCGCCACGATCAGGAAGTA-GCCGGGAAAGCCC 333599 Query 39728 ATCTGGTTGATCATGTCGATCTCG 39751 |||||| |||| |||| ||||| Sbjct 333598 ATCTGGATGATGGTGTCAGTCTCG 333575 Score = 147 bits (162), Expect = 7e-31 Identities = 439/667 (66%), Gaps = 38/667 (6%) Strand=Plus/Minus Query 38188 CTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGT 38247 |||||||||| |||||||||| ||| ||| |||||||| | | | || | || Sbjct 335114 CTCGCCCACGCCCTTCACGGCGCCCAGGCCGTAGCGGATCGTCTTCGCGTCGGTGGGCAC 335055 Query 38248 GAAGGAGGAGTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGC---GCCT 38304 |||| | ||| |||| | |||||| |||||||| ||| | ||| || || | Sbjct 335054 GAAGCGGTAGTCCGAGGCGTTCACGTCCGGCGGCAGCACCGCGATGCCGTTGGCGAGCGT 334995 Query 38305 GCACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTC---GTCGCCCACCGAGGTGAGCAC 38361 | ||| || | | || | | | | | ||||| |||| || | |||| Sbjct 334994 GTCTTCGTAGAAGATCTTGATCGTGTCGGTGTTGTCCAGGTCGGCCGACATGGTG----- 334940 Query 38362 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 38421 ||||||||| | |||| || || | ||| || |||| ||| |||||| || | Sbjct 334939 -GCCGCCATGAAGGCGGCGCAGTGGTAGGCCTTGAGCCACGCGGTGTGGTAGGTGACCAC 334881 Query 38422 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAG--GGTACGAGCACG 38479 |||| || || | ||||| |||||||||| ||||| ||||||| ||| | || Sbjct 334880 CGCGTAGGCGGCCGTGTGCGACTTGTTGAAGCCGTACTCGGCGAACTTGGTC--ATCAGA 334823 Query 38480 TCCCACACC-GCCCGG--ATGGCAGCGTCCGAGTAGCCTCGCTCGCTTGCTCCCTTCTGG 38536 || | | | || ||| | || | ||| |||||| || || || || | Sbjct 334822 TCGAAGAGCTGCTCGGCGAGCGCCGGGTC---GTAGCCCTTCTGGCGGGCGCCGGCGGCG 334766 Query 38537 AAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGA 38596 | | || || | |||||||| | |||||||||||||||||||||| || || || || Sbjct 334765 ATGGTCTCGCGGTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATCGCCCGGCGCAGC 334706 Query 38597 AGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCC 38656 | |||||| ||||||||||| ||| | | |||||| | || | |||||||||| Sbjct 334705 ATGTCGGCGCCGCCGAGGGTGTAGCCGCCGATGATCTGGGAGATCTGCATCACCTGCTCC 334646 Query 38657 TGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCG 38716 ||||| | ||| | |||| |||| || || ||| |||| | || Sbjct 334645 TGGTACACGATCACCCCGTAGGTGGGCGACA-------GGCAGGCGG-----TGAGATCC 334598 Query 38717 GGGTGGATCGGCGT-GATCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGA 38775 ||||||| | || ||| ||||||| || ||||| || ||| | || |||| | | Sbjct 334597 GGGTGGA-AGTAGTCGATGGCCTGCTGGCCCTTCTTCCGCAGGATGAAG-TCGTCCACCA 334540 Query 38776 -GCCCATGCCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCCTCGAACT 38834 ||| ||||| ||| ||||||||||| ||||| | |||||| |||||| ||||| Sbjct 334539 TCCCCGAGCCCAGCGGGCCCGGACGGTAGAGCGCGAGCACGGCGATGATGTCTTCGAAGC 334480 Query 38835 GGTCCGG 38841 |||| || Sbjct 334479 GGTCGGG 334473 >seq377 Length=293092 Score = 145 bits (160), Expect = 2e-30 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 ||||||||| || | ||||||||| || || ||||| ||||||||||| || ||||| | Sbjct 77917 GAAGTCGATATCGAAGTCGGGCATCGACACCCGCTCCGGGTTCAGGAAGCGTTCGAACAG 77976 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 ||| ||| | | |||||||| ||||| || || | | ||| || ||||||| || Sbjct 77977 CAGCGCGTAGGCCAGCGGGTCCAGATCGGTAATGCCCAACGAGTAGGCCACCAGCGAACC 78036 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || | || || || || || || ||| || ||||| | ||| |||||| |||||| Sbjct 78037 GGCACCCGAACCCCGGCCCGGCCCCACCGGTACGCCGTTGTTCTTGGCCCAGTTGATGAA 78096 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGAT 39738 ||||| |||| ||||||||| |||||||||||||| |||| Sbjct 78097 ATCGGCCACGATGAGGAAGTAACCGGGGAACCCCATCTGAATGAT 78141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160230948142550