Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028980.1 Length=62181 Score E Sequences producing significant alignments: (Bits) Value seq538 140 1e-28 >seq538 Length=154069 Score = 140 bits (154), Expect = 1e-28 Identities = 481/739 (65%), Gaps = 42/739 (6%) Strand=Plus/Plus Query 33058 TACCGCGAAGTGGACGCCCGGGCGCTGTGGGACGCGATCATGCGCGGGACCTGGGACTGG 33117 |||||| | ||| |||||| | |||||||| | |||||||| |||| ||| Sbjct 117869 TACCGCAAGGTGCGCGCCCGCGACCTGTGGGATCAGGTCATGCGCTCCACCTACGACCAC 117928 Query 33118 GCGGAGCCTGGGGTGCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGC 33177 || || || || | |||||| ||||| || ||| |||||||| | |||||| Sbjct 117929 GCCGAACCGGGCATCCTGTTCCTCGACCGCATGAACAAGGACAACAACCTTTACTACTGC 117988 Query 33178 GAGACCATCGCCGCCACCAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGC 33237 |||||||||| |||||||||||||||| ||||| || || ||| ||||||| |||| Sbjct 117989 GAGACCATCGAGGCCACCAACCCCTGCGCCGAGCAGCCCCTGCCGTCCTACGGCTGCTGC 118048 Query 33238 TTGTTGGGCTCCTTCAAC---------TTGGTCAAGTACATCTTCAAGGACGGGGCGGGC 33288 | ||||||| ||||| | || ||| || |||| ||| ||| | Sbjct 118049 TGCCTGGGCTCGATCAACCTCACGCTGTACGTGAAGGACGCCTTCTCCGACAAGGC---C 118105 Query 33289 CGCTACGCCTTCGACTGGGACCAGTACCGCGAGGACATC----CCGCAGGTGGTCCGCGC 33344 ||| || ||||| | | | | || || |||| || | | ||||| Sbjct 118106 AGCTTCGACTTCGCCGG------CTTCGGCAAGACCATCGAAACCTC----GATCCGCAT 118155 Query 33345 GATGGACAACGTGGTTGATCGCGCGATCTACCCGCTGCCGCAGCAGAAGCAGGAAGCCAA 33404 | | ||||||||| | || | | || ||||| |||||| | |||||| | Sbjct 118156 GCTCGACAACGTGCTCGAAGCCACCCACTGGCCGCTCGAACAGCAGCACGCCGAAGCCCA 118215 Query 33405 GGACAAGCGCCGCATGGGCCTCGGGATCACCGGCCTGGCCAA--CGCTGCCGAAGCCCTG 33462 | |||||||||| | |||||||| |||||||||| | ||| ||||| | | | ||| Sbjct 118216 GTCCAAGCGCCGCGTCGGCCTCGGCTTCACCGGCCTCGGCAACGCGCTGGCCATG--CTG 118273 Query 33463 GGCCATGAG-TACGGTTCGCCCGCCTTCCTCGCCTT--CGAGGCGGAGGTGCTGGACACG 33519 ||| || | |||| | || || ||| | | | ||| | | | | || Sbjct 118274 CGCC-TGCGCTACGACACCGACGAAGCCCGCGCGATGGCCACCAGGATCT-CCGAATAC- 118330 Query 33520 CTGCGTGACGAGTCCTACCTGGCCAGTGCCCACATCGCCAAGGTCAAGGGCTCCTTCCCG 33579 |||| ||| ||||||| |||||| | | | ||||||||| ||| |||||||| Sbjct 118331 ATGCGCGACCAGTCCTATCTGGCCTCCGTCGAACTCGCCAAGGAACGCGGCGCCTTCCCG 118390 Query 33580 AAGTTCGACAAGGACAAGTACCT-GCAG--GGCCAGTTCATCAAGACCCTCCGCGAGGAC 33636 |||| || || ||||| | | ||| | ||| | | ||| | | || Sbjct 118391 CTGTTCAACGCCGATCTCTACCTCTCCGGCGGCAACTTCGCCTCGCGCCTGCCGGCCGAG 118450 Query 33637 GTGCGGGACGCCATCGCCAAATACGGCATCCGCAACTCCCACCTCACTTCCATCGCCCCG 33696 ||| |||| ||| ||| ||||| | |||||||| ||||| ||||||||||| Sbjct 118451 GTGAAGGACAAGATCCGCAAGCACGGCCTGCGCAACTCGCACCTGCTCTCCATCGCCCCC 118510 Query 33697 ACCGGGACCATCAGCCTG---TGCGCCGACAACGTCAGCTCCGGGATTGAGCCGGTGTTC 33753 ||||| |||||||||||| | ||||||||||| | | ||| || |||||| |||| Sbjct 118511 ACCGGCACCATCAGCCTGGCCTTCGCCGACAACGCCTCCAACGGCATCGAGCCGCCGTTC 118570 Query 33754 GCCTACAGCTTCGACCGCA 33772 | |||| || | ||||| Sbjct 118571 TCATACACCTACACCCGCA 118589 Score = 131 bits (144), Expect = 7e-26 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 32650 GGCGGCGGGATCGGCTATGACTTCAGCACCCTCCGTCCTCGCGGCGACCTGATCCGCAAG 32709 |||||||| ||||||| |||||| | || |||| || |||| || | ||| Sbjct 117497 GGCGGCGGCGTCGGCTACGACTTCTCCTCCATCCGCCCCAAGGGCGCGATGGTGCGCGGC 117556 Query 32710 CTCCAGTCCCACTCCTCCGGCCCCATCAGCTTCATGCACATCTTCGACGCGATC-TGCAA 32768 ||||||| || |||||||||| || || ||||| | | |||||| || || ||| | Sbjct 117557 ACCCAGTCCAACGCCTCCGGCCCGGTCTCCTACATGCGCGTGTTCGAC-CGCTCCTGCGA 117615 Query 32769 GTGCGTCGCCTCCTCCGGCCATCGCCGCGGAGCCCAGATGGGGGTGATGCGCGTGGACCA 32828 | ||||| ||| ||||| |||||||| ||||||||||| ||| ||||| ||||| Sbjct 117616 GACCGTCGAATCCGCCGGCTCCCGCCGCGGCGCCCAGATGGGCGTGCTGCGCTGCGACCA 117675 Query 32829 TCCCGACATCGAGGAGTTCATTCACGCCAAGCAGCCCGG 32867 || ||||||||||| ||||| ||||||||| | | ||| Sbjct 117676 CCCGGACATCGAGGAATTCATCCACGCCAAGGACCACGG 117714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198842871229734