Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq73 91.5 1e-13 seq4651 84.2 2e-11 >seq73 Length=471406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 218/327 (67%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || || || ||||| | || || | ||| |||||||| || ||||| || || || | Sbjct 407931 ACGTGGGCCATCATATGAGTCAGTAAAGCATAACTAGCGATATTGAATGGGACTCCGAGG 407990 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || | ||||||||||| | ||| || || || || ||||| || ||| | ||| Sbjct 407991 CCCATATCAGCTGATCGTTGATATAACTGACACGAAAGTTCTCCATTTGCCACGAAAAAT 408050 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || | | ||||| || || || ||||| | |||| ||| |||||||||| || Sbjct 408051 TGCGCCAAGCAATGGCAAGGAGGAAGGGCCATTTGTGGGATATCTATCGGGTTCCATGCA 408110 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AG 6855 | ||| | || | || || || || ||| | | | ||||| | |||| | Sbjct 408111 CTCATGATAATACGTCGATCCGTTGGATTGGTCTTAATGCGATTTATCAC-TTCTGCTAA 408169 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915 |||||| ||||| || | ||||| | | || ||| | || ||||| || Sbjct 408170 CTGGTCGATACCCTGCCCTGTGTAGTCATCATTGCATGTTTTATATTTGGCGCCAAAATG 408229 Query 6916 TCTCCACTGGAACCCGTAGACCGGGCC 6942 | ||| ||||| ||||| |||||||| Sbjct 408230 ACGCCATTGGAATCCGTATACCGGGCC 408256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 218/327 (67%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 |||||||| ||||| ||||| ||| | || ||||| || | ||| || | | Sbjct 408256 GGCCCGGTATACGGATTCCAATGGCGTCATTTTGGCGCCAAATATAAAACATGCAATGAT 408197 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCGGAA 34521 ||||| | || ||||| |||||| | |||| | ||||| | | | ||| || Sbjct 408196 GACTACACAGGGCAGGGTATCGACCAGTTAGCAGAA-GTGATAAATCGCATTAAGACCAA 408138 Query 34522 CCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGC 34581 || || || | || | ||| | || |||||||||| ||| |||| | ||||| Sbjct 408137 TCCAACGGATCGACGTATTATCATGAGTGCATGGAACCCGATAGATATCCCACAAATGGC 408078 Query 34582 GCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCA 34641 || || || ||||| | | ||||| | ||| || ||||| || || || || || Sbjct 408077 CCTTCCTCCTTGCCATTGCTTGGCGCAATTTTTCGTGGCAAATGGAGAACTTTCGTGTCA 408018 Query 34642 GCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGC 34701 | | ||||||||||| | || ||||| | || || || ||||| || |||||||| || Sbjct 408017 GTTATATCAACGATCAGCTGATATGGGCCTCGGAGTCCCATTCAATATCGCTAGTTATGC 407958 Query 34702 TCTGCTCACGTACATGATCGCTCATGT 34728 | | || || | ||||| || || || Sbjct 407957 TTTACTGACTCATATGATGGCCCACGT 407931 >seq4651 Length=474197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 177/259 (68%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 6512 GGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGC 6571 || |||||||| || ||||| | ||| | |||||| |||||||||||||| || Sbjct 349656 GGGCGGGGCTCGCGGGAGAGCTGCAGGCGGGCCTGCTCGAGGTGGTTCAGGTAGAGGTG- 349714 Query 6572 GCATCCCCCAACG-TATGCACCAGCTCCCCAGGAACCAACCC-CACGACATGAGCGATCA 6629 ||| | || || | ||| | || || || | | || ||| || || || | || Sbjct 349715 GCAGTCGCCGCCGGTCCACACGAAATCGCCCGGCGCGTAGCCGCAC-ACCTGGGCCACCA 349773 Query 6630 TGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCG 6689 | ||||| || ||||| || || |||||||| || || || | ||||| | Sbjct 349774 TCATCGTGAAGAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAGATGTCGGCGC 349833 Query 6690 ATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGT 6749 || |||||||||||||| ||||||| || | || |||||||| ||| | || | || Sbjct 349834 TGCGCTGATAGAGCTGGCACGACAGCTTGCCGTCGGCCACGTAGAACTGGAACAGCGCGT 349893 Query 6750 GGCACGGGGGGAGCGCCAT 6768 |||| || || || ||||| Sbjct 349894 GGCAGGGCGGCAGGGCCAT 349912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 177/259 (68%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 ||||| || || || |||||| | || | ||| |||||||| || | || ||||||| Sbjct 349912 ATGGCCCTGCCGCCCTGCCACGCGCTGTTCCAGTTCTACGTGGCCGACGGCAAGCTGTCG 349853 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 |||||||||||||| || | ||||| | || || || |||||||| || || Sbjct 349852 TGCCAGCTCTATCAGCGCAGCGCCGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGC 349793 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCTGGT 34755 ||||| || ||||| ||| | || || || ||| || | | || || || | || Sbjct 349792 TACGCGCTCTTCACGATGATGGTGGCCCAGGT-GTGCGGCTACGCGCCGGGCGATTTCGT 349734 Query 34756 GCATA-CGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814 | | || || | ||| || |||||||||||||| |||||| | ||| | |||| Sbjct 349733 GTGGACCGGCGGCGACTGC-CACCTCTACCTGAACCACCTCGAGCAGGCCCGCCTGCAGC 349675 Query 34815 TGCAACGAGAGCCCCGACC 34833 | || |||||||| || Sbjct 349674 TCTCCCGCGAGCCCCGCCC 349656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448235745197040