Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_029311.1 Length=124049 Score E Sequences producing significant alignments: (Bits) Value seq3013 95.1 1e-14 >seq3013 Length=6250 Score = 95.1 bits (104), Expect = 1e-14 Identities = 245/357 (69%), Gaps = 21/357 (6%) Strand=Plus/Plus Query 4471 CGTGCGCGTAATTATCATCGGCCAGGATCCGTACCACCGCCCCGGGCAGGCCCATGGGCT 4530 ||||||||| | ||| | || ||||| ||||||||| ||| ||| |||||| | ||||| Sbjct 5665 CGTGCGCGTGGTCATCCTGGGGCAGGACCCGTACCACGGCCGCGGCCAGGCCGAGGGGCT 5724 Query 4531 GGCGTTCAGCGT-GCGCCGGGGGCTGCCGATACCGCCCAGCCTGCGCAACATCTTCCTGG 4589 |||||| ||| ||||| || | ||| | | ||||| ||||||||||||||| || Sbjct 5725 GGCGTTTTCCGTCGCGCCCGGCG-TGCAGCTGCCGCCGTCGCTGCGCAACATCTTCAAGG 5783 Query 4590 CCGTGC-GCGCGTGCTATCC--CGAGATTTCCGCC---CC---GTCCGACGGCTGTTTGG 4640 ||| ||||| || | | | || ||||| || | | | |||| | ||| Sbjct 5784 AGCTGCAGCGCGACCTTGGCGTGGCGTTTCCCGCCTGGCCGGAGCCGGGCGGCAGCCTGG 5843 Query 4641 AGTCGTGGGCGCGGCAAGGGGTCCTGCTTCTCAACACCGCGCTAACGGTCCGGCA-AGGC 4699 |||||| || | || || ||||| || |||||| |||| || || || | |||| Sbjct 5844 TCAAGTGGGCCCGCAACGGCGTGCTGCTGCTGAACACCACGCTCACCGT--GGAAGAGGC 5901 Query 4700 GC-CCCCGGCTCGCACGCCACGCTCGGG-TGGGACGCGCTCGTGTCTGCTGTCGTTCGTC 4757 | |||| | |||||| || ||| ||||| ||||| || || | ||| | Sbjct 5902 CCAGCCCGCCAGCCACGCC-GGCAAGGGCTGGGAGGCGCTGACCGACGCGGT-GATCG-C 5958 Query 4758 GCGTGTCGGAGCGCCGCAGCGGGC--TGGTGTTCATGCTGTGGGGCGCTCACGCGCA 4812 | || || ||| || |||| | ||||||||||||||||||| | |||||||| Sbjct 5959 CCACGTGGGCGCGGCGGCGCGGCCCGCGGTGTTCATGCTGTGGGGCTCGCACGCGCA 6015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396808993292770