Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq986 113 3e-20 seq4622 111 1e-19 seq251 107 1e-18 >seq986 Length=4314454 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || |||||||| || || || | || Sbjct 1408944 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCTTCG 1409003 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| |||||| | || ||||||||| Sbjct 1409004 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 1409063 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| ||||| || ||||| | || ||| || |||||||||| Sbjct 1409064 CAGCGTCTGATTTTCGCCGGTAAACAGCTAGAAGATGGTCGTACTCTATCCGATTACAAC 1409123 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 1409124 ATTCAAAAGGAGTCTAC 1409140 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || |||||||| || || || | || Sbjct 1407804 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCTTCG 1407863 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || | || ||||| ||||| | || |||||||| Sbjct 1407864 GACACCATCGAGAACGTTAAGGCCAAGA-TTCAGGACAAGGAAGGCATCCCACCAGATCA 1407922 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||| || || || || || | || ||||| ||||||||| Sbjct 1407923 GCAGCGTCTGATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGTACTTTGTCCGATTACAA 1407982 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 1407983 CATCCAGAAAGAATCTAC 1408000 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || |||||||| || || || | || Sbjct 1407576 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCTTCG 1407635 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||||| ||||| |||||| | || ||||||||| Sbjct 1407636 GACACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 1407695 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || || || || || |||| || ||| | || |||||| Sbjct 1407696 CAACGTCTGATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTGTCTGACTACAAC 1407755 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || | ||| | ||| Sbjct 1407756 ATCCAGAAGGAATCTACCCTCCATCTGGTT 1407785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || |||||||| || || || | | Sbjct 1408032 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCTTCC 1408091 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||||| ||||| |||||| | || ||||||||| Sbjct 1408092 GACACCATCGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 1408151 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || || || || || |||| || ||| | || |||||| Sbjct 1408152 CAACGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTGTCAGACTACAAC 1408211 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||| || || | ||| | ||| Sbjct 1408212 ATCCAGAAAGAATCTACCCTTCATCTGGTT 1408241 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || |||||||| || || || | || Sbjct 1407348 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCTTCG 1407407 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || ||||| ||||| | || ||||||||| Sbjct 1407408 GACACAATCGAAAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGATCAA 1407467 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||| || || || || || | || ||| | || |||||| Sbjct 1407468 CAGCGTCTGATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGTACTCTGTCAGACTACAAC 1407527 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 1407528 ATCCAGAAGGAATCTAC 1407544 >seq4622 Length=411747 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||||| ||||| || || ||||| || || || || | | Sbjct 274591 ATGCAGATCTTCGTTAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAACCGTCC 274532 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | |||| | ||||| || || | ||||||||||| Sbjct 274531 GATACGATCGAGAATGTCAAGGCCAAAA-TCCAGGACAAGGAGGGAATCCCGCCAGATCA 274473 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || |||||||| || |||||||| | ||||| | ||| ||||| Sbjct 274472 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 274413 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 274412 CATCCAGAAGGAGTCCAC 274395 >seq251 Length=2698768 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || ||||| || ||||| | || ||||| | | Sbjct 661807 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCC 661866 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || || || || || |||||| | ||||||||||| Sbjct 661867 GATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAG 661926 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||||||||| || |||||||| | || ||| | ||| |||||| Sbjct 661927 CAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCCGACTACAAC 661986 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || ||| ||| ||||| | ||||| Sbjct 661987 ATCCAGAAGGAGAGCACTCTACATCTTGTTTT 662018 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || ||||| || ||||| | || ||||| | | Sbjct 662263 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCC 662322 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || || || || || |||||| | ||||||||||| Sbjct 662323 GATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAG 662382 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||||||||| || |||||||| | || ||| | ||| |||||| Sbjct 662383 CAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCCGACTACAAC 662442 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || ||| ||| ||||| | ||||| Sbjct 662443 ATCCAGAAGGAGAGCACTCTACATCTTGTTTT 662474 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || || || ||||| || ||||| | || ||||| | | Sbjct 662035 ATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCC 662094 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || || || || || |||||| | ||||||||||| Sbjct 662095 GATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAG 662154 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || ||||| || || |||||||| | || || | ||||||||| Sbjct 662155 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCGGATTACAAC 662214 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 662215 ATCCAGAAGGAG 662226 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || ||||| || ||||| | ||||| || | | Sbjct 663631 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACCTTGGAAGTCGAGCCATCA 663690 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | |||| | |||| | || || |||||| | || |||||||| Sbjct 663691 GACACCATCGAAAATGTTAAGGCTAAAA-TCCAAGATAAGGAAGGTATCCCTCCAGATCA 663749 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || ||||| || ||||||||||| | |||||| | || ||||| Sbjct 663750 GCAGCGTTTGATCTTCGCCGGTAAGCAACTGGAAGATGGCCGCACTCTGTCGGACTACAA 663809 Query 23790 CATACAAAAAGA 23801 || || || || Sbjct 663810 TATCCAGAAGGA 663821 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || || || ||||| || ||||| | || ||||| | | Sbjct 662491 ATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCC 662550 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || || || || || |||||| | ||||||||||| Sbjct 662551 GATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAG 662610 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 |||||||| || || ||||| || || |||||||| Sbjct 662611 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGA 662645 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| || ||||| || | | Sbjct 663175 ATGCAGATCTTCGTCAAGACTCTGACTGGTAAGACCATCACCCTTGAAGTCGAGCCATCT 663234 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || || || |||||| | ||||||||||| Sbjct 663235 GACACCATTGAAAACGTCAAGGCTAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAG 663294 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 |||||||| || || ||||| || || |||||||| Sbjct 663295 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGA 663329 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| |||||||| || || || || ||||| | || || || || | Sbjct 661578 AATGCAGATTTTCGTCAAAACCCTAACCGGTAAGACCATCACCTTGGAGGTCGAACCCTC 661637 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || | || || || || || || | || || |||| Sbjct 661638 GGACACGATCGAGAATGTGAAGGC-CAAGATCCAGGATAAGGAGGGAATCCCCCCGGATC 661696 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || || ||||| || || ||||| || | || || | ||||||| Sbjct 661697 AGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGTACCCTGTCGGATTACA 661756 Query 23789 ACATACAAAAAGAG 23802 |||| || || ||| Sbjct 661757 ACATCCAGAAGGAG 661770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337990003576556