Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq1991 163 9e-36 seq809 102 3e-17 >seq1991 Length=9072 Score = 163 bits (180), Expect = 9e-36 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTG 34046 |||||| || ||||| ||||||||| ||| || | | | | || | ||||| || Sbjct 5330 GCCGTTACGCTGCTTGCCGATGATCACCTCGGCGATGTTCGGCTCCTTGCTGTCCTTGTT 5271 Query 34047 ATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGA 34106 ||| ||||| ||||| | ||||||||| | ||| || ||||||||||| || || || Sbjct 5270 GTAGTAGTCGTCGCGGTAGATGAACATGATGATGTCCGCATCCTGCTCGATGGCGCCCGA 5211 Query 34107 CTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAG 34166 ||||||||||| |||||| || ||||||| | |||||||||| ||||||||||| Sbjct 5210 TTCGCGCAGGTCGCTCATCATGGGCCGCTTGTCGGTGCGCTGCTCCACCGAGCGGTTGAG 5151 Query 34167 CTGCGACAGCACGATCA-CGGGGATACCAAGCTCCATGGCCAGTAGCTT 34214 |||||||||| |||||| |||| || | |||||| ||||||| | ||| Sbjct 5150 CTGCGACAGCGCGATCACCGGGCATTGC-AGCTCCTTGGCCAGCATCTT 5103 Score = 80.6 bits (88), Expect = 9e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 34564 GCGACGTGCTCGGCGATGTTGATCGCCAGCGCGGTCTTGCCCATTGCAGGACGGCCAGCA 34623 || ||||||||||||||||| | ||| | || |||||||||||| | |||||| | || Sbjct 4741 GCTACGTGCTCGGCGATGTTCACCGCGAACGAGGTCTTGCCCATCGAAGGACGCGCCGCC 4682 Query 34624 ATCACGACCATGTCGCCAGGCTTCAGACCCATCAGCTTCTGGTCCAGGTCGCCGATGCCG 34683 | ||| ||||||||||| | || ||| || | | | |||| || ||| ||| ||| Sbjct 4681 AGCACCACCATGTCGCCCGCCTGCAGGCCGCTGGTCATGCGGTCGAGATCGGCGAAGCCC 4622 Query 34684 GT 34685 || Sbjct 4621 GT 4620 >seq809 Length=68953 Score = 102 bits (112), Expect = 3e-17 Identities = 212/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTG 34046 ||| ||||| ||||| |||| |||| || || | ||| | | || ||| || Sbjct 59470 GCCATTGCGCTGCTTGCCGATAATCAGTTCGGCAATGCCTTTATCCGGGCTGTGTTCGTC 59529 Query 34047 ATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGA 34106 || ||||| || ||||| || ||||||||||| || || |||||||| | |||||||| Sbjct 59530 GTAAACCTCATCACGGTAGACAAACATGATCACATCAGCATCCTGCTCCAATGCCCCGGA 59589 Query 34107 CTCGCGCAGGT--CCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTG 34164 || ||||||| ||| || | || || || | | ||| ||| |||| |||||| Sbjct 59590 ATCCCGCAGGTCACCGTTAT--TGGGACGTTTATCCACCCGGCTCTCGAGGGCGCGGTTA 59647 Query 34165 AGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCACTGGCGG 34224 ||||| || || ||| ||||||| ||| | |||| | ||||| ||| | || Sbjct 59648 AGCTGTGAGAGGGCGACCACGGGGCAACCGATCTCCTTCGCCAGCGCCTTCAGCGAACGC 59707 Query 34225 GACATGTCGCTGACGTCCTCGGTGCGAGTTGACTTG-CCGGAGCTCTCCAGCAACTGCAG 34283 || || ||| | |||| || || ||| | || || | || || ||||||||| Sbjct 59708 GAAATCTCGGCAATTTCCTGTGTCCG-GTTCTCCTGACCAGGGCAACGCATCAACTGCAG 59766 Query 34284 GTAGTCCACCA 34294 |||||||| || Sbjct 59767 GTAGTCCAGCA 59777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160454935488930