Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq4651 136 1e-27 seq2663 80.6 8e-11 >seq4651 Length=474197 Score = 136 bits (150), Expect = 1e-27 Identities = 219/314 (70%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 30211 CCACCATGCAGCGCCCCCCATATCACAAACATCCAGCTTGCTCCATGCCATAGGCCACCA 30270 || || |||||||| ||||| ||||| || |||||| || || ||||| ||||| || Sbjct 323632 CCGCCGTGCAGCGCGCCCCAGATCACGAAGTTCCAGCCCGCGCCGTGCCACAGGCCGCCC 323691 Query 30271 AGAACAAACGTTGCCATTAGGTTGAAGTAAACTCTGGCGGAAGAACA----GCGGTTTCC 30326 || || | || || | ||||||| | |||||||| | |||||| || Sbjct 323692 AGCACCATGGTGGCGAGCAGGTTGAGATGGC----GGCGGAAGCGCCCGTGGCGGTTGCC 323747 Query 30327 ACCTAACGGGATGTAAAGGTAGTCTCGCAGATAGCGGCTTAGGGTCATGTGCCAACGCCG 30386 || | ||| ||||| |||||||| ||||| ||||| ||| ||||||||||| || || Sbjct 323748 GCCCAGCGGAATGTAGAGGTAGTCGCGCAGGAAGCGGGATAGCGTCATGTGCCAGCGGCG 323807 Query 30387 CCAGAAATCTTGAATATCAAGCGCCTTGTAGGGCGAGTTGAAGTTTATTGGGAGCCAAAT 30446 |||||| || || | ||| ||||||||||||||||||||| | || || | | Sbjct 323808 CCAGAACTCGGTGATGTTGCGCGACTTGTAGGGCGAGTTGAAGTTGAGCGGCAGGCGCAC 323867 Query 30447 GTTAAAGAGAAGGGCCGCGCCTATGGCCATGTCGCAGTAACCGCTAAAGTCAAAGTATAG 30506 || | | | | ||| |||||||||||| | || || ||||| ||||| || Sbjct 323868 TCCGAACATCCGCGACAGGCCGATGGCCATGTCGGAATAGCCTGAGAAGTCGAAGTACAG 323927 Query 30507 TTGGAATGTGTAGG 30520 || || ||||||| Sbjct 323928 CTGAAAGGTGTAGG 323941 >seq2663 Length=6941 Score = 80.6 bits (88), Expect = 8e-11 Identities = 111/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 2646 CCGAGGGCTCAAGGCTCTCGCCAAAGAGCTTGGCA--TTCCAATTGTCGCGCTTGCTCAG 2703 ||| || || ||||| || ||||| || || ||| | || | ||||||| || ||| Sbjct 6647 CCGCGGCCTGAAGGCGCTGGCCAAGGAACT--GCAGGTGCCGGTGATCGCGCTCGCCCAG 6590 Query 2704 CTCAATCGGAGCATCGAAACCCGGGCCGA-CGCCAAGCCAAAAATGAGCGACCTGCGCGA 2762 ||||| || || |||| |||| | | ||||| ||| | || |||| ||||||| Sbjct 6589 CTCAACCGCGCCAGCGAAGGCCGGCCAAATCGCCA-GCCCACCCTGGCCGACTTGCGCGA 6531 Query 2763 TTCCGGCGAGATCGAACAAGACGCCGACGTG 2793 ||||||||||||||||| ||||| |||||| Sbjct 6530 CTCCGGCGAGATCGAACAGGACGCGGACGTG 6500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156775143369830