Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq810 145 3e-30 >seq810 Length=78467 Score = 145 bits (160), Expect = 3e-30 Identities = 270/393 (69%), Gaps = 10/393 (3%) Strand=Plus/Plus Query 53019 GGATGCATTCGGCTTTGAACAGCGAGTTGAACGCCTCAGCCATCGCGTTGTCGTATGAAT 53078 |||| | ||||| ||| ||||| ||||| || ||| |||| |||||||| || || | Sbjct 44022 GGATCAACTCGGCCTTGTACAGCCCGTTGATCGTCTCGGCCAGGGCGTTGTCATAGGAGT 44081 Query 53079 CCCCTTTGGAGCCAACAGATG--TCACCGCTTCGGCTTCGGCCAGTCGTTCGGTGTAGCG 53136 | || ||| ||| || || | || || |||| |||||||| || ||||||||||| Sbjct 44082 CGCCCTTGCTGCCTACCGAAGGTTCGATGC--CGGCCTCGGCCAGCCGCTCGGTGTAGCG 44139 Query 53137 GATGGCTCGGTATTGCACTCCGCGGTCGGAGTGGTGGATCAGCCCGGCCACGTCGTGGCC 53196 |||| ||||||| ||| | ||||||||| | ||| || | |||| | Sbjct 44140 GATGCTGACGTATTGCGATCCCCTGTCGGAGTGACACACGAGC--GGAC----CGTGCGC 44193 Query 53197 GGCACGCGACCGTGCCCACAATCCCATGTTCAGGGCGTCGAGGGCGAGGTCGGTGTGCAT 53256 || || ||| || |||| || | ||| || ||||| ||| ||| |||| Sbjct 44194 ACCAGGCTGCCGAGCGTACAAGGCCTGCTCCAGAGCATCGAGCACGAAGTCCACCCGCAT 44253 Query 53257 GGTGGTCGAGACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGAACGCCGC 53316 | |||| ||| ||||||| |||| ||||||||||||||| | ||||| ||| | Sbjct 44254 GCTGGTGCTCACCCGCCAGCCCACGATGCGCCGCGAGAACACGTCGATCACGAAGGCCAC 44313 Query 53317 GTACACCCAGCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACGCGTTCGG 53376 ||||| ||||||| ||| || ||| || | ||| |||||||||| |||||| Sbjct 44314 GTACAGCCAGCCCTGCCAGGTCGAGACGTATGTGAAGTCGCTCACCCACAACTGGTTCGG 44373 Query 53377 TGCCGCCGCGGTGAACTGACGGTTGACCCGGTC 53409 | ||| ||||||| ||||||||| |||| Sbjct 44374 GCGCTGCGCACTGAACTGCCGGTTGACCAGGTC 44406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175836466546768