Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4280 394 1e-104 seq98 159 5e-34 seq4284 122 1e-22 seq4600 109 8e-19 >seq4280 Length=912600 Score = 394 bits (436), Expect = 1e-104 Identities = 999/1518 (66%), Gaps = 11/1518 (1%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || |||||||| |||| |||| || |||||| || || || ||||| | ||| Sbjct 357403 TGGAATTCTCCGGACAGCACTCGTCGGTTGTAAACGTTGGAAGTGTACGGTTCGAATGAT 357344 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || |||||||| | |||||| || || ||||| || ||||| || |||| | | | Sbjct 357343 TCGTTGTTTCCAAGAATTTGCGCCGTCGAAGCCGTGGGCATCGGAGCCAGAAGCAGGGAA 357284 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || | | ||||| | ||| || || || | ||||||||| | |||| Sbjct 357283 TTGCGAACGCCATGCTTGGCGATCTTTTCCTTCAAGGCAGCCCAATCCCACATGTCTGTT 357224 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATAT 77366 || | | ||| | |||||| || |||| ||| || || | |||| ||| Sbjct 357223 GGCTCTTTGTTCCACATATCGTACTGCAGAACTCCCTTGCTCACCGGACATCCCGGATAG 357164 Query 77367 GTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAA 77426 ||||| || | || || |||| || | |||||| || ||||| || || || || || Sbjct 357163 GTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGCTTCTAAGGCACCATAGTAG 357104 Query 77427 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGT 77486 || |||||||| || | || ||| || | ||| ||||| || || | |||||| | Sbjct 357103 ATAGTTTCGAAGATTTGCTGATTCAGTTTTTGAGCTTCTTCGCTGTCGTAAGGATAACGC 357044 Query 77487 AAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 77546 | | ||| |||||||| || | |||||| || || || || || || | || | | || Sbjct 357043 ATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGGCGCATA 356984 Query 77547 TTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTT 77606 ||||| || || ||||| | ||||| |||||||||| || ||||| |||||||| Sbjct 356983 TTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTCGATGATTTTGTTGAGATTC 356924 Query 77607 CTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC---TATA 77663 || | | ||| | || || || ||||| | |||||| || | || | | Sbjct 356923 TTAGTGGCAATTTTTGCTACTTCTTTCAGTTTTTGGAAATCATATGTCTTGTCGGGTTTC 356864 Query 77664 ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA 77723 || ||||||||||| || || || ||||| |||||||| || | |||| | || Sbjct 356863 ACGAACATGTTCAATGCGATGGACGCTAGGTTACAAACAGCAATTTCATCCTTGGAGGAG 356804 Query 77724 TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTG 77783 |||| | || ||||| || || || || ||||| || || | || || || || Sbjct 356803 TATTCAACAATTTCGGTGCAAAGGTTTGAGCACTTGATGGTTCCGATGTTCTGCTGATTA 356744 Query 77784 CTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGAT 77843 || || | ||||| | |||||||| || || ||||| |||||||| | || || Sbjct 356743 CTTTTCCTGTTGCAAGCATCCTTATACAGCATGTACGGAACACCGGTTTCCACTTGGGAC 356684 Query 77844 TCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTT 77903 ||||| || | ||| | || ||||| | | ||||||| | || | Sbjct 356683 TCGATGATTGCAAACCACAAATCTTGGGCTTTCACTTTCCGAATGTATCGTCCTTCCGCT 356624 Query 77904 TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963 || ||| || || || |||||| || || ||||| || | ||||| ||| Sbjct 356623 TCGTATGATGTGTACAGTTTTTCAAACTCCTCACCCCATGTGTCGGATAGCCCAGGACAT 356564 Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 |||| ||||||||||| ||||||| | | ||| ||||| ||||| || | ||| Sbjct 356563 TCATGAGGGCACATCAAGCACCAGTCTTCGTTAGCCTCCACTCGCTTCATGAACAAATCC 356504 Query 78024 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT 78083 || ||||| || || || | || | || || |||||| || || ||||| Sbjct 356503 GGAATCCAAAGCGCGTAGAACATGTCCCTGGCTCGGACATCTTCAGCGCCGGTGTTCTTC 356444 Query 78084 TTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACT 78143 || | ||| || ||||| | || ||| |||||| ||||| ||||| || || | | Sbjct 356443 TTTAAATCCAGGAACTCGAAAACATCGCCATGCCACGGTTCGAGATAAATGGCAAAGGCA 356384 Query 78144 CCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAAC 78203 || || || || |||||||||||||| | || |||| |||||||| || || |||||| Sbjct 356383 CCTGGCCGCTTGTTACCTCCCTGATCAACGTACTTGGCAGTGTTATTGTACACCCTCAAC 356324 Query 78204 ATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGA 78263 || ||||| | |||||| || |||| || || |||| ||| || |||| |||| | Sbjct 356323 ATGGGAATCAAACCGTTGGAAATTCCGTTCGTGCCAGCAATGTAGGTTCCCTTTGCTCTG 356264 Query 78264 ATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACG 78319 || |||| | || || |||||||| ||| || || || | || || | Sbjct 356263 AT----GCAATGAACATTCAGGCCGATTCCTCCAGCCGATTTCGAAATCAACGCACACTG 356208 Query 78320 TTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| || ||||| || ||||| | | || || ||| Sbjct 356207 CTTCAAGGTGTCGTAGATTCCCTCGATGCTGTCGTCGCTCATGGTCAACAGGAAGCAGGA 356148 Query 78380 AGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCA 78439 |||| ||| | | || | || ||| | || || || ||||| || || | Sbjct 356147 CGACAGCTGAGGTCGGCAGGTGGCCGCCGCAAACATCGTTGGCGAAGCATGAGTGAAATA 356088 Query 78440 TTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCC 78499 | | || || || | |||||| || ||||| || | || || || || ||||| Sbjct 356087 TCTCTCCGACAGCAAATTGTACGTCTCAATGGCAGCGTCGATATCTTCGCCGTGGATTCC 356028 Query 78500 TACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAA 78559 | || || ||||||||||| ||||| || | ||| || |||| || || || | Sbjct 356027 AATGGCAACCCGCATCAACATGTGCTGTGGCCGTTCCACGATCTTGCCTTTGATCTTGAG 355968 Query 78560 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTA 78619 ||| || ||| ||||| || || || || |||||||| || |||||| | ||||| Sbjct 355967 CAAATACGATCGTTCCAGCGTCTTGAAGCCGAAATAGTTATAGCCAAAGTCCCGATCGTA 355908 Query 78620 AATAATAACAGAATTTAG 78637 ||| ||| | ||||| || Sbjct 355907 AATGATAGCCGAATTCAG 355890 >seq98 Length=5729030 Score = 159 bits (176), Expect = 5e-34 Identities = 572/887 (64%), Gaps = 13/887 (1%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 |||||| ||| || ||||| || || || ||||| || || |||||||| ||||| Sbjct 2603155 CATAACACCCCACTTCTGATACTCTCCTACTTTCTTCTCAAAGAAGTTAGTTTTACCTTC 2603214 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCC 47956 | || || ||||||||| ||| ||||| | ||| ||||| || | | | Sbjct 2603215 AAGCGAAATGAACTCCATAAAACTAAAGGGATTCTTCGTATTGTAAATCTTATCGATGAC 2603274 Query 47957 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATT 48016 || || | ||||| ||| || |||||||| ||||| || | |||||||| Sbjct 2603275 CAACTCGAGCAGCAGTCCATCAGCCACGAATTCAATATACTGCGACAAAAGGTCACAATT 2603334 Query 48017 CATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGC 48076 ||| || | || | ||| || || | | ||| || || || |||| ||| ||| | Sbjct 2603335 CATGCCAAGCAGGTCAACCGGAAGGGTTTTCGTCAGGAATTCCTGTTTGATCAGGACTGT 2603394 Query 48077 ATCCACTATTA--TCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAAC 48134 || || | ||||| || ||| | |||| | | || || ||| ||| Sbjct 2603395 TTCGCGGATAAACTCGATC--ACATGTTCTTGTGATGGTTTCTGTACCAGATATTTGAAC 2603452 Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 || | | | |||| || || || ||||| || | || ||||||| || ||| Sbjct 2603453 ATAAGAGAAACAAATTCCATGTGCAGGCCTTCGTCACGTGAGATCAATTCGTAGGAGAAT 2603512 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254 || || || ||| | |||||||| || || | |||| || | |||||| |||| Sbjct 2603513 GTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATGGATGCGAAACTTCCACTG 2603572 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTC--TCTCCGTAACTGGCTTCGT 48312 ||||| || |||| || | || || || || | | | |||||| | |||| | | Sbjct 2603573 AAGAAAATTTCTTCCACAACGGCGAAGGC--TACGACGCGTTCTCCGAAGTTGGCCTTTT 2603630 Query 48313 TG--TGTATCCACCGTTG--TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 || || || | | ||| || | | ||||| |||||||| ||||| |||| | || Sbjct 2603631 TGCTTGAATTC-CAGTTCAATGTCTATTCAGCTTTCTTCTTCACACAGGGCAGATTATCG 2603689 Query 48369 ATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGA 48428 || ||||| || | | | ||| ||| ||| || |||||||| || | || Sbjct 2603690 ATGGCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAAGTATCGATAAGCAGC 2603749 Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 |||||||| ||| | ||||| |||||||| |||||||| || || || | || Sbjct 2603750 GAGTACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCATAGAAGCAACGTGCC 2603809 Query 48489 TCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCA 48548 || |||| ||| | |||| | || ||||| | | ||||| || | | ||||| Sbjct 2603810 TCGGTGACCTGGAGCTCCTGGCTGAAACGTTCCACGAGGTTCTCGTTCATGCTGCCATCG 2603869 Query 48549 CTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA 48608 ||| |||| || || ||||||||| || || | || ||| || | || || Sbjct 2603870 GAAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTT 2603929 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 | ||| || | |||||| || | ||| ||||| || |||||| | ||||||||| Sbjct 2603930 TCCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCAGAGAGATGCCTCT 2603989 Query 48669 GCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 || | || ||||| | ||| || || || ||||| |||||||| Sbjct 2603990 GCCTACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAAAAT 2604036 >seq4284 Length=891408 Score = 122 bits (134), Expect = 1e-22 Identities = 195/280 (70%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| ||| || ||||||||| || | || |||||||| ||| | || Sbjct 84850 TTTCTTTGGAATCGCGAATGTAAGTATCAATAAGCAGCGAGTACATTTCACTGTGGACAT 84791 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTAC 48510 |||| ||||| || ||||||||||| || || | |||||| |||| ||| |||||| | Sbjct 84790 TTTCCATTGCAATTTGAAATCCGTAGAAGCAACGCGCTTCGGTGACCTGGACCTCCTGGC 84731 Query 48511 AAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATA 48570 || ||||| | | ||||| || || || ||||| ||| ||||| || || | | Sbjct 84730 TGAAACGTTCCACAAGGTTCTCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCCAGCA 84671 Query 48571 CATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTG 48630 ||||| || || | || ||| ||| | || || | ||| || | |||||| | Sbjct 84670 CATGTGAGATGAAGTGCTTCTCGCCGGACTTGAGCTTTTCCCAATCGGCCAGATCTTTAG 84611 Query 48631 ATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 | | ||| ||||| || ||||||| || ||||||||||| Sbjct 84610 AGAGATCGACTTCCTCTACTGTCCAGAAAGATGCCTCTGC 84571 >seq4600 Length=436310 Score = 109 bits (120), Expect = 8e-19 Identities = 252/380 (66%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 48336 TCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA 48395 ||||| |||||||| ||||| |||| | || || ||||| || | | | ||| Sbjct 110435 TCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGT 110494 Query 48396 TTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCA 48455 ||| ||| || |||||||| || | || |||||||| ||| | ||||| Sbjct 110495 TTGGAATCACGAATATAAGTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCC 110554 Query 48456 ATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAAT 48515 ||||| || |||||||| || || || | || || |||| ||| | |||| | || Sbjct 110555 ATTGCAATTTGAAATCCATAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAA 110614 Query 48516 CGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGT 48575 ||||| | | ||||| || | | ||||| ||| |||| || || ||||||||| Sbjct 110615 CGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATGT 110674 Query 48576 TTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATA 48635 || || | || ||| || | || || | ||| || | |||||| || | | Sbjct 110675 GAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAGA 110734 Query 48636 TCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCA 48695 || ||||| || |||||| | ||||||||||| | || ||||| | ||| || || Sbjct 110735 TCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCCA 110794 Query 48696 CTGTATTGGATTGGGAAAAT 48715 || ||||| |||||||| Sbjct 110795 TGATACTGGATGGGGAAAAT 110814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694627493256480