Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq4651 105 1e-17 seq4037 91.5 2e-13 >seq4651 Length=474197 Score = 105 bits (116), Expect = 1e-17 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 99525 GACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCT 99584 ||||| || ||||| || || | || | || || || ||||| || || | || Sbjct 350275 GACCGCACCGGCACCGGCACCCTCTCGGTCTTCGGCTGGCAGATGCGCTTCGATCTCGCC 350216 Query 99585 GAAGGTTTTCCTCTGGTCACTACTAAGC-GCTGTCACCTCCGTTCTATTATTCATGAACT 99643 || |||||||| ||| |||| || ||| ||| ||| ||| || || || || || || Sbjct 350215 GACGGTTTTCCGCTGCTCACCACCAAGAAGCTC-CACACCCGCTCGATCATCCACGAGCT 350157 Query 99644 CCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTAT 99703 || ||||||||| || || ||||| | || ||| || || || ||| || | || Sbjct 350156 GCTGTGGTTCCTGCGCGGCGACACCAACATCCGGTATCTCAAGGACAACAAGGTTTCGAT 350097 Query 99704 CTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 |||| | ||||||| |||||||||| || | || ||||| ||||| ||||||||||| Sbjct 350096 CTGGGACGAGTGGGCCGACGAGAACGGCGAGCTGGGCCCGGTGTACGGCAAGCAGTGGCG 350037 >seq4037 Length=4543 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 99894 ATTGACCAAATCTCCAAGGTCATTGACCAGTTGAAAAACGACCCAGATAACCGACGCATT 99953 || ||||||||| | |||| || ||| | |||| || |||| || || ||||| Sbjct 4376 ATCGACCAAATCAGCCAGGTGATCGACACGCTGAAGAAGAACCCCGACTCGCGCCGCATC 4435 Query 99954 ATTGTCAGTGCATGGAACGTTGCCGACCTCGACGATATGGCCTTAGCGCCATGCCATGCG 100013 || ||||| || |||||||| ||||| || ||| | ||||| | ||| ||||| ||| Sbjct 4436 ATCGTCAGCGCGTGGAACGTGGCCGAGCTGGACCAGATGGCGCTGATGCCCTGCCACGCG 4495 Query 100014 TTCTTCCAGTTCTAC 100028 ||||||||||||||| Sbjct 4496 TTCTTCCAGTTCTAC 4510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734231538160920