Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq476 129 2e-25 >seq476 Length=182463 Score = 129 bits (142), Expect = 2e-25 Identities = 196/277 (71%), Gaps = 8/277 (3%) Strand=Plus/Minus Query 26926 GATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACC 26985 |||||| |||||||| || || ||| | || || ||| || ||||| ||||| Sbjct 52939 GATTTCGGTGGTGTAACGGTCCTGGCCGTCCTTGTCCTGCCACTTGCGGGTGCGCAGGGA 52880 Query 26986 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTT 27045 |||||| | |||||| |||||| ||||||||||| | || ||||| || || ||||| Sbjct 52879 GCCTTCCACATACACCTGGCTGCCCTTGCGCAGGTACTGGCCGGCGATCTCGGCGAGCTT 52820 Query 27046 GCCGAAGATGACAACGCGGTGCCATTCCGT---CT-GCTCTTTTGGTTCGCCTGTGGCCT 27101 |||||||| || |||||||||||||| || || || ||| |||||| ||||||| Sbjct 52819 GCCGAAGAACACCACGCGGTGCCATTCGGTGGCCTCGCGCTT----TTCGCCGGTGGCCT 52764 Query 27102 TATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCA 27161 | || ||| || ||||| ||||| | ||| ||| | ||| | || ||| Sbjct 52763 TGTCGCGCCAGTTGTCGGTGGTGGCCAGCGTGATGTTGCAGATCGCGTCGCCGCTCGGGG 52704 Query 27162 TGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGAT 27198 |||||| ||| || || ||||| | ||| ||||| Sbjct 52703 CGTAGCGGGTTTCGGGGTCCTTGCCCAGATTGCCGAT 52667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134008429519920