Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031059.1 Length=38773 Score E Sequences producing significant alignments: (Bits) Value seq476 425 1e-114 >seq476 Length=182463 Score = 425 bits (470), Expect = 1e-114 Identities = 517/695 (74%), Gaps = 21/695 (3%) Strand=Plus/Plus Query 15342 ATCACCGCGCTGCCGGCCAACCCCGACACGGCGCGGGGGTTCAGTGCCAATGTGATCCTC 15401 ||||||||||||||||||||||| ||||| || ||||| ||| ||||| ||| |||| Sbjct 138418 ATCACCGCGCTGCCGGCCAACCCGGACACTGCCCGGGGCTTCTCGGCCAACGTGTTCCTG 138477 Query 15402 GACGAATTCGCCTTTCACGCCAAGTCGCGCGAGATCTGGGCGGCGCTCTTCCCGGTCGTG 15461 ||||| ||||||||||| ||| | ||| |||||||| ||||||| |||||||| | Sbjct 138478 GACGAGTTCGCCTTTCATGCCGACAGCCGCAAGATCTGGACGGCGCTGTTCCCGGTGATC 138537 Query 15462 TCCAAGGGCGATCAGAAGCTGCGGGTGATCAGCACGCCCAACGGCAAGGGCAACAAGTTC 15521 ||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 138538 TCCAACGGCTG---GAAGCTGCGGGTCACCAGCACGCCCAACGGCAAGGGCAACAAGTTC 138594 Query 15522 TTCGAGCTGATGACGGCCGAG------GACAGTGTCTGGTCGCGCCATGTGGTCGATATC 15575 | |||||||||||| | | || || | || ||||| || || |||| || ||| Sbjct 138595 TACGAGCTGATGACCGACAAGACGCTGGAAGGCGTGTGGTCACGTCACCTGGTGGACATC 138654 Query 15576 TACGAGGCCGTGCGCCA-GGGCTGCCCGCGCGATGTGGACATGCTGCGCGCCGGGATCGC 15634 ||| |||| ||| | |||||||| |||| | || || | ||||| | | | Sbjct 138655 TACAAGGCGGTGGCTGATGGGCTGCC-GCGCAACGTCGATGAGATGCGCCTGGCGCTGAA 138713 Query 15635 GGACGAGGATGCCTGGGCGCAGGAATACGAGCTGAAATGGCTGGATGCCGCCAGCGCCTG 15694 ||||| || || ||| ||||||||| |||||| || |||||||| | |||| ||| || Sbjct 138714 CGACGACGACGCTTGGTCGCAGGAATTCGAGCTCAAGTGGCTGGACGAAGCCACCGCATG 138773 Query 15695 GCTCGATTACGACCTGATCTCCGCCTGCGAACGCGAGGAGGCCGGCAAGCCAGAGCTTTA 15754 | || ||||| |||||| | | || | ||| |||||||| ||| ||| || Sbjct 138774 GATCTCGTACGATCTGATCGACTCGGTGGAGCACGACCAGGCCGGCCGGCCCGAGGGCTA 138833 Query 15755 CCAGGGCGGCCCCTGCTTCGTGGGGGTCGACATTGCGGCGCGCAACGACCTGTTCGTGAT 15814 | ||||| || ||||||||||| |||||||| || || |||||||| |||||||||| Sbjct 138834 CACCGGCGGGCCGTGCTTCGTGGGAGTCGACATCGCCGCCCGCAACGATTTGTTCGTGAT 138893 Query 15815 CTGGGTGGTGGAAGAGACGGGCGGC--CG--GCTGGTCACGCGCGAGGTGATTGCGCAAA 15870 |||||| || |||| || |||| || ||| | ||||||||| | || || | | Sbjct 138894 CTGGGTCGT---CGAGATGGTCGGCGACGTTGCTTG-GACGCGCGAGATCATCGCCCGCA 138949 Query 15871 AGCGGATCACATTCGCCGAACAGGACGCGCTGCTGGACGATGTCTTCCGCCGTTATCGCG 15930 |||||||||| |||||||| ||||| || ||||||| | || || ||| || || | Sbjct 138950 AGCGGATCACCTTCGCCGAGCAGGATGCACTGCTGGCCAGCGTGTTTGACCGCTACCGGG 139009 Query 15931 TGGTGCGCGCGGGTATGGACCAGACCGGCATGGGCGAAAAACCGGTGGAGGACGCCAAGC 15990 || |||| | |||||||||||||||||||| |||||||| || ||||| ||| || Sbjct 139010 TGCTGCGTTGCTGCATGGACCAGACCGGCATGGGTGAAAAACCCGTCGAGGATGCCCAG- 139068 Query 15991 GCCG-CCATGGCGCGGCCCGCATCGACGGCGTGCT 16024 |||| ||| ||| | ||| | || |||||||| Sbjct 139069 GCCGACCACGGCAAGAGCCGGGTTGAGGGCGTGCT 139103 Score = 93.3 bits (102), Expect = 1e-14 Identities = 146/205 (71%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 14983 CCTTCTATCCCTATCAGCGCGCCTGGATGGCGGATGCCAGCCGGTTCAAGATCGGCATGA 15042 || ||||| | || |||||| ||| || || ||||| ||||||||||||||| Sbjct 138098 CCCTCTATGCGTACCAGCGCCAGTGGCTGCTCGACCGTAGCCGCTTCAAGATCGGCATGT 138157 Query 15043 TGTCCCGCCAGATCGGCAAGACCTTTTCGACCTGCGGCGAATGCGTGGATGACTGTTTCG 15102 | ||||||||| || |||||||| |||| | || || || ||||| |||| Sbjct 138158 TTGCCCGCCAGACGGGTAAGACCTTCACGACTACCCTGGAGGTGGTCGACGACTGCTTCG 138217 Query 15103 CCGGCTG-GGCCGAGGATCGCCGCGCGCGCTGGGTGATCCTCAGCCGGGGCGAACGCCAG 15161 ||||| ||| | | ||||| | |||||||||||||||||||| || || |||||| Sbjct 138218 -AGGCTGAGGCGGCCGGCGGCCGCACCCGCTGGGTGATCCTCAGCCGCGGGGAGCGCCAG 138276 Query 15162 GCGGCCGAGGCGATGGATG-AGGCG 15185 || ||||| || || | ||||| Sbjct 138277 GCCAAGGAGGCCATTGAGGAAGGCG 138301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123944998028990