Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq4651 237 9e-58 seq4037 122 5e-23 >seq4651 Length=474197 Score = 237 bits (262), Expect = 9e-58 Identities = 436/630 (69%), Gaps = 13/630 (2%) Strand=Plus/Minus Query 836 GATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACC 895 || ||||||||||||||||| || |||||| ||| |||| | ||| ||| || Sbjct 350275 GACCGCACCGGCACCGGCACCCTCTCGGTCTTCGGCTGGCAGATGCGCTTCGATCTCGCC 350216 Query 896 GAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTT 955 || || || |||||| ||||||| ||| ||||| | ||| | |||| || Sbjct 350215 GACGGTTTTCCGCTGCTCACCACCAAGAAGCTCCACACCCGCTCGATCATCCACGAGCTG 350156 Query 956 CTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATC 1015 ||||||||||| | |||||||| ||| | | ||||| |||||| || | ||| Sbjct 350155 CTGTGGTTCCTGCGCGGCGACACCAACATCCGGTATCTCAAGGACAACAAGGTTTCGATC 350096 Query 1016 TGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGG 1075 ||||||||||||||||||| ||| | || || || || |||||| ||||||||| Sbjct 350095 TGGGACGAGTGGGCCGACGAGAACGGCGAGCTGGGCCCGGTGTACGGCAAGCAGTGGCGC 350036 Query 1076 CACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCC-GC-CGTGG 1133 | |||| | | | | || | || | || ||||||||| |||| || | | | Sbjct 350035 CGCTGGGAA----ACGCCCGACGGGCGCAGC--ATCGACCAGATC--GGCCAGCTCATCG 349984 Query 1134 AGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTG 1193 || ||| || |||| ||||| ||||| || | || || || |||||| | | Sbjct 349983 AGGCGCTCAAGAAGAACCCGGACTCCCGCCGCCACATCGTGTCGGCCTGGAACCCGGCCG 349924 Query 1194 ACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACG 1253 || | | |||||| || | || |||||| |||||||| | ||||| | ||||| Sbjct 349923 ACGTGGACCGCATGGCCCTGCCGCCCTGCCACGCGCTGTTCCAGTTCTACGTGGCCGACG 349864 Query 1254 GCCGGCTCTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCA 1313 || ||| ||| ||| |||| ||||||||||| ||||| ||||| || || || |||| Sbjct 349863 GCAAGCTGTCGTGCCAGCTCTATCAGCGCAGCGCCGACATCTTCCTGGGCGTTCCCTTCA 349804 Query 1314 ATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCG-GGTG 1372 | |||||| ||||||||| || || ||| | || ||| | ||| || || | | Sbjct 349803 ACATCGCCAGCTACGCGCTCTTCACGATGATGGTGGCCCAGGTGTGCGG-CTACGCGCCG 349745 Query 1373 GGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGCG 1432 || || | | ||||||||||||||||||||| ||||| |||||| |||| ||||| Sbjct 349744 GGCGATTTCGTGTGGACCGGCGGCGACTGCCACCTCTACCTGAACCACCTCGAGCAGGCC 349685 Query 1433 CTGATGCAGCTCCGCCGACGACCGCGGCCC 1462 | |||||||| ||| ||| | | |||| Sbjct 349684 CGCCTGCAGCTCTCCCG-CGAGCCCCGCCC 349656 >seq4037 Length=4543 Score = 122 bits (134), Expect = 5e-23 Identities = 176/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 830 AAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGAC 889 |||| || ||||| ||||| ||||| |||| ||||||| |||| |||| | |||| Sbjct 4103 AAGGGCGACCGCACGGGCACGGGCACCAAGAGCGTGTTCGGCTACCAGATGCGCTTCGAC 4162 Query 890 CTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTG-CGTA 948 || | ||||||||| |||||||| ||||| ||| || ||| | || || | ||| Sbjct 4163 CTGAACGAGGGCTTTCCGCTGGTGACCACCAAGAAGGTGCACCTGAAGTCCATCATCGT- 4221 Query 949 CGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGT 1008 ||| || ||||||||||| | || || || || ||| || || |||||| Sbjct 4222 CGAGCTGCTGTGGTTCCTTACCGGTTCCAGCGACAACAACTGGCTGAAGGAACGCGGCGT 4281 Query 1009 CACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCA 1068 || ||||||||||||||||| || | ||| | | | || || |||||||||| ||| Sbjct 4282 GACGATCTGGGACGAGTGGGCGCGCGAAGACGGCAGCTTGGGCCCCGTCTACGGCGTGCA 4341 Query 1069 GTGGCG 1074 |||||| Sbjct 4342 GTGGCG 4347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296114031516057