Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq743 95.1 3e-15 >seq743 Length=85660 Score = 95.1 bits (104), Expect = 3e-15 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 29626 ACACGACCTGCGCCGCACTGCCAGCACGCTGTTGCATGAAGCTGGCTATCCATCA--GAC 29683 ||| ||| |||| ||||| | ||||||| || ||||||| || ||||| || || ||| Sbjct 13585 ACATGACTTGCGGCGCACAGGCAGCACGTTGCTGCATGAGGCCGGCTA--CAACACGGAC 13528 Query 29684 TGGATTGAAAAGGCGCTGGCGCATGAACAGAAGGGCGTGCGTGCGGTGTACAACAAAGCG 29743 |||||||| ||| |||||||| || ||| ||||| | || || |||||||| || Sbjct 13527 TGGATTGAGAAGTGCCTGGCGCACGAGCAGCGAGGCGTCAGGGCCGTCTACAACAAGGCC 13468 Query 29744 GAGTACGCCAGGCAGCGCGCCTACATGTTGCAGCAGTGGGCGAATATG 29791 |||||| | |||||| | |||||||| | |||||| | ||| Sbjct 13467 GAGTACCGCGAGCAGCGGACGGCGATGTTGCAAGACTGGGCGGACATG 13420 Score = 80.6 bits (88), Expect = 7e-11 Identities = 140/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 28626 TGCTTACCGATACCAAACTGAAAAACCTGAAGCCTCAGGACAAACTCTATAAAGTTTCTG 28685 |||| ||||||||||| ||| ||||| ||||| ||||||| ||||| || || | Sbjct 14584 TGCTGACCGATACCAAGCTGCGCAACCTTAAGCCGAAGGACAAGCTCTACAAGGTGAACG 14525 Query 28686 ACCGTGACGGGCTGTACGTAGCCGTGCTCA-TATCAGGCTCTGTCTCGTTCCGCTATGAC 28744 |||||||||| || || |||||||| | || | || | | ||||||||||| || Sbjct 14524 ACCGTGACGGCCTCTATGTAGCCGT-CACACCGGCCGGGGCGATTTCGTTCCGCTACAAC 14466 Query 28745 TACAGAATCAACGGCCGCCGGGAAACTCTGGTGATTGGTCAGTATGGTCGTGACGGTATC 28804 ||| ||| |||| || | ||| || | | || | || |||| || ||| ||| Sbjct 14465 TACGCCATCCACGGTCGGCAGGAGACCATCACCTTCGGCCGCTACGGTCTTGGCGGCATC 14406 Query 28805 AGCCTGGCGGAAGCGCGGGAA 28825 | || ||||||| || ||| Sbjct 14405 ACTCTTTCGGAAGCCCGCGAA 14385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133502858080948