Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq4651 188 2e-43 seq377 181 3e-41 >seq4651 Length=474197 Score = 188 bits (208), Expect = 2e-43 Identities = 187/242 (77%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||||||||| | ||||||||| ||||| ||||||||||||||||| |||||||| | Sbjct 333812 GAAGTCGATGTCGAAGTCGGGCATCGACACCCGCTCGGGGTTCAGGAAGCGCTCGAACAG 333753 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 ||| ||| | || || || ||||| ||||| || ||||||| |||||||| || Sbjct 333752 CAGCGCGTAGGCGAGCGGATCGAGGTCGGTGATCTTCAGCGAGTAGGCCACCAGCGAGCC 333693 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 || | ||||| || || || || ||| ||||||||| | ||||||||| |||||| Sbjct 333692 CGCGCCGGAGCCCCGCCCCGGCCCCACCGGCACGCCGTTGTTCTTGGCCCACTGGATGAA 333633 Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTA 40405 ||| || |||| |||||||||| || || |||| ||||||||| |||| ||||| | Sbjct 333632 GTCCGCCACGATCAGGAAGTAGCCGGGAAAGCCCATCTGGATGATGGTGTCAGTCTCGAA 333573 Query 40406 CT 40407 || Sbjct 333572 CT 333571 Score = 165 bits (182), Expect = 3e-36 Identities = 475/713 (67%), Gaps = 52/713 (7%) Strand=Plus/Minus Query 38801 CCAGGCTTCCCGGAGTTCGGCGATCTCCTGGACCATGCC--CTCGCCCACGTTCTTCACG 38858 || ||||||||| || |||| || | ||| ||| |||||||||| ||||||| Sbjct 335153 CCCGGCTTCCCGCGCGGCGAGGATCGCCCGCACC--GCCGGCTCGCCCACGCCCTTCACG 335096 Query 38859 GCGGTCAGCCCGAAGCGGATCTCCGTCTTCCCGTTCGGGGTGAAGGAGCTGTT---CGAG 38915 ||| ||| ||| |||||||| |||||| ||| | || | | ||| || |||| Sbjct 335095 GCGCCCAGGCCGTAGCGGATC---GTCTTCGCGTCGGTGGGCACGAAGCGGTAGTCCGAG 335039 Query 38916 ACCGACACGTCGGGCGGCAGGAC-GTGAAGTCCCATCCGC---CGTGCCT-CGCCGAGGT 38970 | |||||| |||||||| || | || | || | || |||| || || || | Sbjct 335038 GCGTTCACGTCCGGCGGCAGCACCGCGATG--CCGTTGGCGAGCGTGTCTTCGTAGAAGA 334981 Query 38971 ACGTGGCCATCTTGTTCTTGTC---GTCGCCCACCGAGGTGAGCACGGCCGCCATGTACT 39027 | || | | | | | ||||| |||| || | |||| ||||||||| | Sbjct 334980 TCTTGATCGTGTCGGTGTTGTCCAGGTCGGCCGACATGGTG------GCCGCCATGAAGG 334927 Query 39028 CGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAG 39087 |||| || || | ||| || |||| ||| |||||| || | |||| || || | Sbjct 334926 CGGCGCAGTGGTAGGCCTTGAGCCACGCGGTGTGGTAGGTGACCACCGCGTAGGCGGCCG 334867 Query 39088 AGTGCGCCTTGTTGAAGGCGTACCCGGCGAAG--GGTACGAGCACGTCCCACACCGCCTG 39145 ||||| |||||||||| ||||| ||||||| ||| | || || | | | || Sbjct 334866 TGTGCGACTTGTTGAAGCCGTACTCGGCGAACTTGGTC--ATCAGATCGAAGAGCTGCTC 334809 Query 39146 GATG-GCACCG--TCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTC 39202 | | || ||| || |||||| || ||| || || || | || || | Sbjct 334808 GGCGAGCGCCGGGTC---GTAGCCCTTCTGGCGGGCGCCGGCGGCGATGGTCTCGCGGTG 334752 Query 39203 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACC 39262 |||||||| |||||||||||||||||||||| || ||||| || | |||||| || Sbjct 334751 CTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATCGCCCGGCGCAGCATGTCGGCGCCGCC 334692 Query 39263 CAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACCAG 39322 ||| |||| || ||| |||||| | || | ||||||||||||||| | || || Sbjct 334691 GAGGGTGTAGCCGCCGATGATCTGGGAGATCTGCATCACCTGCTCCTGGTACACGATCAC 334632 Query 39323 CCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCCTCCACCTCGGGGTGGATCGGCGT 39382 ||||||||| ||| || |||| |||| | || ||||||| | || Sbjct 334631 CCCGTAGGTGGGCGACA-------GGCAGGCGG-----TGAGATCCGGGTGGA-AGTAGT 334585 Query 39383 -GATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGA-GCCCACGCCCATC 39440 ||| |||||||| || ||||| || ||| | || |||| | | ||| ||||| | Sbjct 334584 CGATGGCCTGCTGGCCCTTCTTCCGCAGGATGAAG-TCGTCCACCATCCCCGAGCCCAGC 334526 Query 39441 GGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTCCTCGAAGTTGTCCGG 39493 || ||||||||||| ||||||| |||||| ||||||| |||||| ||| || Sbjct 334525 GGGCCCGGACGGTAGAGCGCGAGCACGGCGATGATGTCTTCGAAGCGGTCGGG 334473 >seq377 Length=293092 Score = 181 bits (200), Expect = 3e-41 Identities = 175/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 ||||||||| || | ||||||||| ||||| ||||| ||||||||||| || ||||| | Sbjct 77917 GAAGTCGATATCGAAGTCGGGCATCGACACCCGCTCCGGGTTCAGGAAGCGTTCGAACAG 77976 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 ||| ||| | | |||||||| || || ||||| | ||||||| ||||||||||| Sbjct 77977 CAGCGCGTAGGCCAGCGGGTCCAGATCGGTAATGCCCAACGAGTAGGCCACCAGCGAACC 78036 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 |||| |||| || || || || || ||| |||||||| | |||||||||| |||||| Sbjct 78037 GGCACCCGAACCCCGGCCCGGCCCCACCGGTACGCCGTTGTTCTTGGCCCAGTTGATGAA 78096 Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGAT 40390 ||||| |||| |||||||| |||||||||| ||| ||||| Sbjct 78097 ATCGGCCACGATGAGGAAGTAACCGGGGAACCCCATCTGAATGAT 78141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160131753746296