Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq1357 147 6e-31 seq2739 141 3e-29 seq1476 141 3e-29 seq1398 82.4 2e-11 >seq1357 Length=15515 Score = 147 bits (162), Expect = 6e-31 Identities = 251/353 (71%), Gaps = 11/353 (3%) Strand=Plus/Plus Query 9329 GGCGATGGTTCGCGAGAGCCTTGAGCCAGGACACAGCGTTTCGGTGGTGGCCCGGC-GCA 9387 |||| |||| ||| | | ||| ||||| ||||| ||| |||||||||| | | | Sbjct 13831 GGCGCTGGTGCGCCGCACCTATGAACCAGGCATGAGCGTGTCGCTGGTGGCCCGCCAGGA 13890 Query 9388 ACGGCGTCAATGCCAATCAACTATTTCACTGGCGCAAGCTTTACCAGGACGGAAGTTTGT 9447 | |||||| || | || || || ||||||||||| | | | ||| ||| Sbjct 13891 AAGGCGTCTCGGCGGGACTGCTGTTCCAGTGGCGCAAGCTCGAGCGCCAGGGAGCGTTGA 13950 Query 9448 CGGCGGTCAGCGCCGGTGAAGCCGTGGTGCCTGCGTCCGAGTTGAGCGATGCGCTCAGGC 9507 | ||||| ||||| |||||||||||||| || ||||||||| | ||| | ||| Sbjct 13951 CCGCGGTGTCGGCCGGCGAAGCCGTGGTGCCGGCATCCGAGTTGGCAGCTGCCCG--GGC 14008 Query 9508 AGAT-TCGTGA-GCTACAACGGATGCTGGGCAAGAAGACGATGGAAGCCGAAGTCCTCAA 9565 ||| ||| | ||| || || |||| ||||||||||| |||| |||| ||||||| Sbjct 14009 AGAGATCGCCAAGCTCCAGCGTGTGCTCGGCAAGAAGACCCTGGAGAACGAAATCCTCAA 14068 Query 9566 AGAGGCCGTGGAGATAGCCCGCTCGCGAAAA--TGGATTGCGCACTCACCCTTGTTGCCG 9623 |||||||||||| || | || || |||| |||||||||| ||| ||||||||||| Sbjct 14069 GGAGGCCGTGGAG-TACGCAGC-CGAAAAAAAGTGGATTGCGCGCTCGCCCTTGTTGCCC 14126 Query 9624 GGGGACGGTCAGTGAAACTGGTCAG-TGAATGTCTCGGTGTGGCGCGCTCGCA 9675 ||||||| ||||||| |||| | | | | | || ||||||||||||| Sbjct 14127 GGGGACGACCAGTGAAGACGGTCTGCCGGACG-ATGGGGCTGGCGCGCTCGCA 14178 Score = 116 bits (128), Expect = 1e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 10178 CTAAGCGATAACGGTTCGGCCTACATCGCTGAACAGACGCGCCTGTTTGCTCGACAGATT 10237 || ||||| |||||| ||| |||||||||| ||||||| | | || || | Sbjct 14699 CTGAGCGACAACGGTGGGGCTTACATCGCTGCCGAGACGCGAGCGCTGGCCCGCGCACTG 14758 Query 10238 GGCCTACAGCCAGTGACCACGCCGGTACGCAGCCCGCAGAGCAACGGCATGGCAGAGAGC 10297 ||||| | || | | |||||| || ||||||||||||||||||||||||| || ||| Sbjct 14759 GGCCTCAAACCCATCAACACGCCCGTGTGCAGCCCGCAGAGCAACGGCATGGCCGAAAGC 14818 Query 10298 TTCGTTAAGACAATCAAGCGCGACTACGTGGCGCACATG 10336 ||||| || || |||||||||||||||| |||| |||| Sbjct 14819 TTCGTGAACACCTTCAAGCGCGACTACGTAGCGCGCATG 14857 >seq2739 Length=6781 Score = 141 bits (156), Expect = 3e-29 Identities = 237/331 (72%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 9350 TGAGCCAGGACACAGCGTTTCGGTGGTGGCCCGGCGCAACGGCGTCAATGCCAATCAACT 9409 ||| ||||| ||||| ||| |||||||||| | | |||||| || | || Sbjct 6049 TGAACCAGGCATGAGCGTGTCGCTGGTGGCCCGCCAGGAAGGCGTCTCGGCGGGACTGCT 6108 Query 9410 ATTTCACTGGCGCAAGCTTTACCAGGACGGAAGTTTGTCGGCGGTCAGCGCCGGTGAAGC 9469 || || ||||||||||| | | | ||| ||| | ||||| ||||| ||||| Sbjct 6109 GTTCCAGTGGCGCAAGCTCGAGCGCCAGGGAGCGTTGACCGCGGTGTCGGCCGGCGAAGC 6168 Query 9470 CGTGGTGCCTGCGTCCGAGTTGAGCGATGCGCTCAGGCAGA-TTCG-TGAGCTACAACGG 9527 ||||||||| || ||||||||| || | || | |||||| ||| |||| || || Sbjct 6169 CGTGGTGCCGGCATCCGAGTTG-GC-AGCTGCCCGGGCAGAGATCGCCAAGCTCCAGCGT 6226 Query 9528 ATGCTGGGCAAGAAGACGATGGAAGCCGAAGTCCTCAAAGAGGCCGTGGAGATAGCCCGC 9587 |||| ||||||||||| |||| |||| ||||||| |||||||||||| || | || Sbjct 6227 GTGCTCGGCAAGAAGACCCTGGAGAACGAAATCCTCAAGGAGGCCGTGGAG-TACGCAGC 6285 Query 9588 TCGCGAAAA--TGGATTGCGCACTCACCCTTGTTGCCGGGGGACGGTCAGTGAAACTGGT 9645 || |||| |||||||||| ||| ||||||||||| ||||||| ||||||| ||| Sbjct 6286 -CGAAAAAAAGTGGATTGCGCGCTCGCCCTTGTTGCCCGGGGACGACCAGTGAAGACGGT 6344 Query 9646 CAG-TGAATGTCTCGGTGTGGCGCGCTCGCA 9675 | | | | | | || ||||||||||||| Sbjct 6345 CTGCCGGACG-ATGGGGCTGGCGCGCTCGCA 6374 >seq1476 Length=13608 Score = 141 bits (156), Expect = 3e-29 Identities = 237/331 (72%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 9350 TGAGCCAGGACACAGCGTTTCGGTGGTGGCCCGGCGCAACGGCGTCAATGCCAATCAACT 9409 ||| ||||| ||||| ||| |||||||||| | | |||||| || | || Sbjct 9898 TGAACCAGGCATGAGCGTGTCGCTGGTGGCCCGCCAGGAAGGCGTCTCGGCGGGACTGCT 9957 Query 9410 ATTTCACTGGCGCAAGCTTTACCAGGACGGAAGTTTGTCGGCGGTCAGCGCCGGTGAAGC 9469 || || ||||||||||| | | | ||| ||| | ||||| ||||| ||||| Sbjct 9958 GTTCCAGTGGCGCAAGCTCGAGCGCCAGGGAGCGTTGACCGCGGTGTCGGCCGGCGAAGC 10017 Query 9470 CGTGGTGCCTGCGTCCGAGTTGAGCGATGCGCTCAGGCAGA-TTCG-TGAGCTACAACGG 9527 ||||||||| || ||||||||| || | || | |||||| ||| |||| || || Sbjct 10018 CGTGGTGCCGGCATCCGAGTTG-GC-AGCTGCCCGGGCAGAGATCGCCAAGCTCCAGCGT 10075 Query 9528 ATGCTGGGCAAGAAGACGATGGAAGCCGAAGTCCTCAAAGAGGCCGTGGAGATAGCCCGC 9587 |||| ||||||||||| |||| |||| ||||||| |||||||||||| || | || Sbjct 10076 GTGCTCGGCAAGAAGACCCTGGAGAACGAAATCCTCAAGGAGGCCGTGGAG-TACGCAGC 10134 Query 9588 TCGCGAAAA--TGGATTGCGCACTCACCCTTGTTGCCGGGGGACGGTCAGTGAAACTGGT 9645 || |||| |||||||||| ||| ||||||||||| ||||||| ||||||| ||| Sbjct 10135 -CGAAAAAAAGTGGATTGCGCGCTCGCCCTTGTTGCCCGGGGACGACCAGTGAAGACGGT 10193 Query 9646 CAG-TGAATGTCTCGGTGTGGCGCGCTCGCA 9675 | | | | | | || ||||||||||||| Sbjct 10194 CTGCCGGACG-ATGGGGCTGGCGCGCTCGCA 10223 Score = 116 bits (128), Expect = 1e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 10178 CTAAGCGATAACGGTTCGGCCTACATCGCTGAACAGACGCGCCTGTTTGCTCGACAGATT 10237 || ||||| |||||| ||| |||||||||| ||||||| | | || || | Sbjct 10744 CTGAGCGACAACGGTGGGGCTTACATCGCTGCCGAGACGCGAGCGCTGGCCCGCGCACTG 10803 Query 10238 GGCCTACAGCCAGTGACCACGCCGGTACGCAGCCCGCAGAGCAACGGCATGGCAGAGAGC 10297 ||||| | || | | |||||| || ||||||||||||||||||||||||| || ||| Sbjct 10804 GGCCTCAAACCCATCAACACGCCCGTGTGCAGCCCGCAGAGCAACGGCATGGCCGAAAGC 10863 Query 10298 TTCGTTAAGACAATCAAGCGCGACTACGTGGCGCACATG 10336 ||||| || || |||||||||||||||| |||| |||| Sbjct 10864 TTCGTGAACACCTTCAAGCGCGACTACGTAGCGCGCATG 10902 >seq1398 Length=15916 Score = 82.4 bits (90), Expect = 2e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 4594 ACATCCACTCCCCGGGCGGCGACGTCTTCGAGGGGACGGCGATCTATAACCTGCTGCGCA 4653 ||||| || ||| ||||||||||| |||||||| ||||||||| |||||||||||| Sbjct 14190 ACATCAACAGCCCTGGCGGCGACGTGTTCGAGGGCCTGGCGATCTACAACCTGCTGCGCG 14131 Query 4654 ACCACCCGGCCAGCGTCGACGTGTACATCGATGGCTTGGCTGCCTCGATGGCCTCGGTCA 4713 | ||| |||| |||| ||| | | | ||| |||| ||| ||| || ||| Sbjct 14130 AGCACGCGGCAGGCGTGACCGTCAAGGTGGTCGGCGTGGCGGCCAGCGCGGCGGCGATCA 14071 Query 4714 TCGCCATGGCCGG 4726 |||||||||| || Sbjct 14070 TCGCCATGGCGGG 14058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138356983858926