Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq4651 205 1e-47 seq4037 125 1e-23 seq377 86.0 1e-11 >seq4651 Length=474197 Score = 205 bits (226), Expect = 1e-47 Identities = 193/246 (78%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907 ||||| ||||| || ||||||||||| || ||||| | ||||||||||| | | Sbjct 350275 GACCGCACCGGCACCGGCACCCTCTCGGTCTTCGGCTGGCAGATGCGCTTCGATCTCGCC 350216 Query 201908 GAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTG 201967 || |||||||||||| |||||||||| ||| | ||| || || |||||||| |||||| Sbjct 350215 GACGGTTTTCCGCTGCTCACCACCAAGAAGCTCCACACCCGCTCGATCATCCACGAGCTG 350156 Query 201968 CTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATC 202027 ||||||||||| || ||||||||||||| |||| | || |||||||| || | ||| Sbjct 350155 CTGTGGTTCCTGCGCGGCGACACCAACATCCGGTATCTCAAGGACAACAAGGTTTCGATC 350096 Query 202028 TGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087 |||||||| ||||| || | ||||| || | |||||||||||||| ||||| ||||| Sbjct 350095 TGGGACGAGTGGGCCGACGAGAACGGCGAGCTGGGCCCGGTGTACGGCAAGCAGTGGCGC 350036 Query 202088 AGCTGG 202093 ||||| Sbjct 350035 CGCTGG 350030 >seq4037 Length=4543 Score = 125 bits (138), Expect = 1e-23 Identities = 176/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||| || || ||||||||| || ||||| |||||||||||| || | | Sbjct 4108 CGACCGCACGGGCACGGGCACCAAGAGCGTGTTCGGCTACCAGATGCGCTTCGACCTGAA 4167 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 || || ||||||||||| |||||||| ||||| ||||| || |||||| ||||| Sbjct 4168 CGAGGGCTTTCCGCTGGTGACCACCAAGAAGGTGCACCTGAAGTCCATCATCGTCGAGCT 4227 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 |||||||||||| | ||| || | ||| | | | |||| || | ||| || || Sbjct 4228 GCTGTGGTTCCTTACCGGTTCCAGCGACAACAACTGGCTGAAGGAACGCGGCGTGACGAT 4287 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 ||||||||| |||||| || |||| ||| ||||| || ||||| ||| ||||| Sbjct 4288 CTGGGACGAGTGGGCGCGCGAAGACGGCAGCTTGGGCCCCGTCTACGGCGTGCAGTGGCG 4347 Query 202087 TAGCTGG 202093 || ||| Sbjct 4348 CAGTTGG 4354 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 202205 ATTGACCAAATCGCCAAAGTGGTTGACCAGCTGCGTAATGACCCCGACAACCGTCGTATT 202264 || ||||||||| | | ||| | ||| |||| || |||||||| || || || Sbjct 4376 ATCGACCAAATCAGCCAGGTGATCGACACGCTGAAGAAGAACCCCGACTCGCGCCGCATC 4435 Query 202265 ATTGTCAGCGCCTGGAACGTGGCAGAGCTAGACGAGATGGCCTTGGCCCCGTGTCATGCG 202324 || |||||||| ||||||||||| ||||| ||| ||||||| || || || || ||| Sbjct 4436 ATCGTCAGCGCGTGGAACGTGGCCGAGCTGGACCAGATGGCGCTGATGCCCTGCCACGCG 4495 Query 202325 TTCTTCCAGTTCTAC 202339 ||||||||||||||| Sbjct 4496 TTCTTCCAGTTCTAC 4510 >seq377 Length=293092 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549 || || || |||||||||||||| || || ||||| ||||| ||||||||||| ||||| Sbjct 62782 CTGTCGTGCCAGCTCTATCAGCGCAGCGCCGACATCTTCCTGGGCGTACCGTTCAACATT 62841 Query 202550 GCGTCTTACGCCTTG 202564 ||||| ||||||||| Sbjct 62842 GCGTCCTACGCCTTG 62856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787956343359720