Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq4651 201 2e-46 seq4037 141 1e-28 >seq4651 Length=474197 Score = 201 bits (222), Expect = 2e-46 Identities = 188/239 (79%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| |||||| |||| | ||||| | |||||||| || || || | Sbjct 350275 GACCGCACCGGCACCGGCACCCTCTCGGTCTTCGGCTGGCAGATGCGCTTCGATCTCGCC 350216 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | || || |||||| |||||||||| ||| | ||| || || ||||||||||| ||| Sbjct 350215 GACGGTTTTCCGCTGCTCACCACCAAGAAGCTCCACACCCGCTCGATCATCCACGAGCTG 350156 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||||||| ||||||||||||||||| |||||| || |||||||| || ||| Sbjct 350155 CTGTGGTTCCTGCGCGGCGACACCAACATCCGGTATCTCAAGGACAACAAGGTTTCGATC 350096 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||| |||||||| || || | ||||| || ||||| || ||||| ||||||||||| Sbjct 350095 TGGGACGAGTGGGCCGACGAGAACGGCGAGCTGGGCCCGGTGTACGGCAAGCAGTGGCG 350037 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 ||||| || ||||| || |||||||| || ||| ||||||| || || || ||||||||| Sbjct 349858 CTGTCGTGCCAGCTCTATCAGCGCAGCGCCGACATCTTCCTGGGCGTTCCCTTCAACATC 349799 Query 196809 GCTTCGTACGCTCTGTTGGTTCAC----ATGGTGGCACAGCAGGTCAATATGGTGGCGGG 196864 || ||||| || ||||| |||||||| ||| | | | | |||| Sbjct 349798 GCCAGCTACGCGCT----CTTCACGATGATGGTGGCCCAGGTGTGCGGCTACGCGCCGGG 349743 Query 196865 TGATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCAC 196924 |||||||| ||||| |||||||| ||| || ||| ||||| || || |||||| Sbjct 349742 CGATTTCGTGTGGACCGGCGGCGACTGCCACCTCTACCTGAACCACCTCGAGCAGGCCCG 349683 Query 196925 GTTGCAGCTCTCCCG 196939 ||||||||||||| Sbjct 349682 CCTGCAGCTCTCCCG 349668 >seq4037 Length=4543 Score = 141 bits (156), Expect = 1e-28 Identities = 177/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| || ||||||||||||| | ||||| || |||||||| || |||||| | Sbjct 4109 GACCGCACGGGCACGGGCACCAAGAGCGTGTTCGGCTACCAGATGCGCTTCGACCTGAAC 4168 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | || || |||||||| |||||||| ||| |||||||| || |||||| ||| ||| Sbjct 4169 GAGGGCTTTCCGCTGGTGACCACCAAGAAGGTGCACCTGAAGTCCATCATCGTCGAGCTG 4228 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 |||||||||| | ||| || | ||| | | | ||||| || | ||| | ||| Sbjct 4229 CTGTGGTTCCTTACCGGTTCCAGCGACAACAACTGGCTGAAGGAACGCGGCGTGACGATC 4288 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTT-GGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||| |||||||| ||||| ||| | ||| |||||||||||||| ||||||||| Sbjct 4289 TGGGACGAGTGGGCGCGCGAAGACGGC-AGCTTGGGCCCCGTCTACGGCGTGCAGTGGCG 4347 Score = 89.7 bits (98), Expect = 8e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 196491 CGTCGCATCATCGTCAGTGCGTGGAATGTGGGTGAACTTGACCAGATGGCGTTAGCGCCC 196550 || |||||||||||||| |||||||| |||| || || |||||||||||| | |||| Sbjct 4427 CGCCGCATCATCGTCAGCGCGTGGAACGTGGCCGAGCTGGACCAGATGGCGCTGATGCCC 4486 Query 196551 TGCCATTCGTTTTTCCAGTTCTAC 196574 ||||| |||| |||||||||||| Sbjct 4487 TGCCACGCGTTCTTCCAGTTCTAC 4510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770261395608120