Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq3125 91.5 2e-13 >seq3125 Length=3744586 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 156164 AAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACC 156223 ||||||||||| | ||| |||||||| ||||| |||||||||| || | | ||||| Sbjct 3687619 AAACAATCGTCGAATGTTGGCTTCCGACTCACCGACATATTTGTCCAAAATCTGTGGACC 3687678 Query 156224 GTTAACTATTTTGACGGGTCGTGA---TTTAAAAGCTTGAGCGATACAGCGAGCCATTAA 156280 ||| || ||||| ||| || || || || | | | | |||| ||||||||| | Sbjct 3687679 GTTCACAATTTT--CGGTTCCCGAGCGTTCAACATCGT-ACCGATTTGGCGAGCCATCAG 3687735 Query 156281 TGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAA 156340 || |||||| || ||||| || || |||| | ||||| | || ||||| || || Sbjct 3687736 CGTCTTACCGGTACCGGGAGGACCATACAACAGGATACCTTTCACGTGCTTACAGCCCAA 3687795 Query 156341 TTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGA 156400 || || ||||| ||| | || || ||||| |||| || || ||| | Sbjct 3687796 TTGCTCCACGATTTCCGGCGGGAAAACTCGAGAGGCAAACGCTCGCCGGAAGATGGCATT 3687855 Query 156401 AAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT 156447 || || || ||||| || || | ||||||| |||| | ||||| Sbjct 3687856 GAACTCCTTGTCCAAACCACCGATGCCCATTTTTCCAAAGTCCCAAT 3687902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667035534040920