Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1902 118 1e-21 seq1662 114 1e-20 seq1400 95.1 1e-14 seq1371 86.0 6e-12 >seq1902 Length=3516739 Score = 118 bits (130), Expect = 1e-21 Identities = 218/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACG 16854 |||||| || || ||||| || || || |||| | |||||||||||| || | | | Sbjct 3490131 TCTATCGGCCACGAATTCGATGTACTGCGACATCAGTTCGCAGTTCATGCCAAGCAAATC 3490190 Query 16855 TACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914 |||||||| |||| |||||| || ||||| || | || |||||| || || Sbjct 3490191 AACCGGAAGGGCTTTCGTCAAGAACTCCTGCTCAATCAGCACTGCTTCCCGGATGATTTC 3490250 Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974 | || ||||||| |||||| | || |||| ||| ||||| || || || || || Sbjct 3490251 AATCACACGTTCCTGCGACGGTTTCTGAACCAGATATTTGAACATAAGGCAAGCAAAGTC 3490310 Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 |||| |||||||| | | ||| || ||||| || || || | ||||||||| Sbjct 3490311 CGTGTGTAGGCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAAGTAAGGCCGGGCATCAG 3490370 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAA-CGACC-CAGAAAAGAATATACCCTCG 17092 || || ||||| | ||||||||| | || || | ||| | | ||||| || || || Sbjct 3490371 GCCGCGCTTCTTGAGCCAAAATATGGACGCAAAGCTACCGCTG--AAGAAGATGCCTTCC 3490428 Query 17093 ACGGATGCAAACGCGA 17108 |||| ||||| |||| Sbjct 3490429 ACGGCGGCAAAGGCGA 3490444 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 17233 TATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTG 17292 ||| || |||||||| || || |||||||| ||| | ||| ||||| || || || Sbjct 3494932 TATGTAAGTATCGATAAGCAGCGAATACATTTCACTGTGCACGTTTTCCATCGCAATTTG 3494991 Query 17293 AAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAG 17352 || ||||| ||||| || || || | | ||||| ||| | ||| ||||| | || Sbjct 3494992 GAACCCGTAGAAGCAACGCGCCTCGGTGACCTGAACCTCCTGGCTGAACCGTTCGACGAG 3495051 Query 17353 ATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATA 17412 || |||||||| || || ||| ||||||||||| |||| | ||| ||||||| Sbjct 3495052 GTTCTCGTTCACAATACCATCGGAAGCGGCGAAAAAGGCCAGCACATGGGAGATGAAATG 3495111 Query 17413 TTTTTCGTCCGG 17424 || || ||||| Sbjct 3495112 CTTCTC-TCCGG 3495122 >seq1662 Length=3905379 Score = 114 bits (126), Expect = 1e-20 Identities = 217/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACG 16854 |||||| || || ||||| || || || |||| | |||||||||||| || | | | Sbjct 1651941 TCTATCGGCCACGAATTCGATGTACTGCGACATCAGTTCGCAGTTCATGCCAAGCAAATC 1651882 Query 16855 TACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914 |||||||| |||| |||||| || ||||| || | || |||||| || || Sbjct 1651881 AACCGGAAGGGCTTTCGTCAAGAACTCCTGCTCAATCAGCACTGCTTCCCGGATGATTTC 1651822 Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974 | || ||||||| |||||| | || |||| ||| ||||| || || || || || Sbjct 1651821 AATCACACGTTCCTGCGACGGTTTCTGAACCAGATATTTGAACATAAGGCAAGCAAAGTC 1651762 Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 |||| |||||||| | | ||| || ||||| || || || | ||||||||| Sbjct 1651761 CGTGTGTAGGCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAAGTAAGGCCGGGCATCAG 1651702 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAA-CGACC-CAGAAAAGAATATACCCTCG 17092 || || ||||| | ||||||||| | || || | ||| | | ||||| || || || Sbjct 1651701 GCCGCGCTTCTTGAGCCAAAATATGGACGCAAAGCTACCGCTG--AAGAAGATGCCTTCC 1651644 Query 17093 ACGGATGCAAACGCGA 17108 |||| || || |||| Sbjct 1651643 ACGGCGGCGAAGGCGA 1651628 Score = 89.7 bits (98), Expect = 5e-13 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 17233 TATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTG 17292 ||| || |||||||| || || |||||||| ||| | ||| ||||| || || || Sbjct 1649959 TATGTAAGTATCGATAAGCAGCGAATACATTTCACTGTGCACGTTTTCCATCGCAATTTG 1649900 Query 17293 AAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAG 17352 || ||||| ||||| || || || | | ||||| ||| | ||| ||||| | || Sbjct 1649899 GAACCCGTAGAAGCAACGCGCCTCGGTGACCTGAACCTCCTGGCTGAACCGTTCGACGAG 1649840 Query 17353 ATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATA 17412 || |||||||| || || ||| ||||||||||| |||| | ||| ||||||| Sbjct 1649839 GTTCTCGTTCACAATACCATCGGAAGCGGCGAAAAAGGCCAGCACATGGGAGATGAAATG 1649780 Query 17413 TTTTTCGTCCGG-TGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 || || ||||| | || |||||| | ||||||||| | ||| ||||||| Sbjct 1649779 CTTCTC-TCCGGACTTGAGCTTTTCCCAGTCGGCCAGATCTTTGGAGAGATCTACTTCTT 1649721 Query 17472 C 17472 | Sbjct 1649720 C 1649720 >seq1400 Length=7880666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/268 (69%), Gaps = 9/268 (3%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTG-TCGTGGAGCCC 119841 ||||| || || |||||||||||||| || || ||| || ||| ||||||| || Sbjct 4958914 TTCATGTAGCGGATCTTTCCGAACACTTCCCGCTCACGCCA-GCCCTGGTCGTGGATGCC 4958856 Query 119842 CGCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTT 119901 ||| | || ||| | ||| || |||||||| || || || || || | || ||| Sbjct 4958855 CGCAATGGACCACATGCAGCCAACGTATCCATTTGGGTCTCGGCCGTCCAGCTGGTAGCG 4958796 Query 119902 ATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCAGGAGTCTCGCTCCATTCCAGT 119959 |||||| | |||||| | || | | ||| || ||||| | |||| || || Sbjct 4958795 ATCGTTGAGGTAGATC--GCCGTCTCCAGAGCTTCCTCCGGAGTTTTTGTCCACTCGAGA 4958738 Query 119960 AtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGA 120019 || || || ||||||||||| || | | | || |||||||| ||||| |||||||| Sbjct 4958737 ATCTTCTTCGCCCAGTACATGCGAAGGAAACCGTGCATTTTGCCTTCCTTGACCATTTGG 4958678 Query 120020 AGTTGTGCGGCGTTCCATAAGGGATCGT 120047 | || || | |||||||| |||||| Sbjct 4958677 ATCTGCGCCGAGTTCCATA---GATCGT 4958653 >seq1371 Length=8723579 Score = 86.0 bits (94), Expect = 6e-12 Identities = 183/268 (68%), Gaps = 9/268 (3%) Strand=Plus/Plus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTG-TCGTGGAGCCC 119841 ||||| || || || ||||||||||| ||||| ||| || ||| || |||| || Sbjct 8603524 TTCATGTAGCGGATTTTTCCGAACACTTCCCGTTCACGCCA-GCCCTGGTCATGGATGCC 8603582 Query 119842 CGCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTT 119901 ||| | || ||| | ||| || |||||||| || || || || || | || ||| Sbjct 8603583 CGCAATGGACCACATGCAGCCAACGTATCCATTTGGGTCTCGGCCGTCCAGCTGGTAGCG 8603642 Query 119902 ATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCAGGAGTCTCGCTCCATTCCAGT 119959 |||||| | ||| || | || | | ||| || ||||| | |||| || || Sbjct 8603643 ATCGTTGAGGTAAATC--GCCGTCTCCAGGGCTTCCTCCGGAGTTTTAGTCCACTCGAGA 8603700 Query 119960 AtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGA 120019 || || || ||||||||||| || | | | || |||||||| ||||| |||||||| Sbjct 8603701 ATCTTCTTCGCCCAGTACATGCGAAGGAAACCGTGCATTTTGCCTTCTTTGACCATTTGG 8603760 Query 120020 AGTTGTGCGGCGTTCCATAAGGGATCGT 120047 | || || | |||||||| |||||| Sbjct 8603761 ATCTGCGCCGAGTTCCATA---GATCGT 8603785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517529847205800