Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq498 93.3 9e-14 seq467 93.3 9e-14 seq175 91.5 3e-13 seq95 91.5 3e-13 >seq498 Length=1421371 Score = 93.3 bits (102), Expect = 9e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 ||||| || || ||| | || || |||||||||||||| | ||||| || ||| ||| Sbjct 1156754 TGTCCACCGTTTAAGATTGTCATTTTGGACGAGGCGGACGCTATGACCCACGCCGCACAG 1156813 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 | || || || | || ||||||| | | | ||||| || ||| |||||||| Sbjct 1156814 GCTGCGCTGCGTAGGACAATGGAGAAGGAAACAAAAACAACGCGATTCTGCTTGGTGTGC 1156873 Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 ||||||||||||| |||||||| || | |||| || || ||||||| || || Sbjct 1156874 AACTACGTGTCGAGGATCATCGAACCAATCACTTCCCGTTGTACCAAGTTCCGTTT 1156929 >seq467 Length=1590605 Score = 93.3 bits (102), Expect = 9e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 ||||| || || ||| | || || |||||||||||||| | ||||| || ||| ||| Sbjct 227605 TGTCCACCGTTTAAGATTGTCATTTTGGACGAGGCGGACGCTATGACCCACGCCGCACAG 227664 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 | || || || | || ||||||| | | | ||||| || ||| |||||||| Sbjct 227665 GCTGCGCTACGTAGGACAATGGAGAAGGAAACGAAAACTACGCGGTTCTGCTTGGTGTGC 227724 Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 ||||||||||||| |||||||| || | |||| || || ||||||| || || Sbjct 227725 AACTACGTGTCGAGGATCATCGAACCAATCACTTCCCGTTGTACCAAGTTCCGTTT 227780 >seq175 Length=5193165 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||||||| ||||| || ||||| || || || | || |||||||||||||| Sbjct 3012380 TTCAAAACGTTGGAGCGGTCCTATCTGCTTAAGATCAAGGGTAAGATCGTGGAACGTCCC 3012439 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGA 248942 ||||||||||||||||| ||||| |||| |||||| ||| ||||| || Sbjct 3012440 CAGCACATGTTGATGCGCGTGGCCATCGGTATTCACGGGGAAGACATCGA 3012489 >seq95 Length=6909593 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||||||| |||||| || ||| | || || || | || |||||||||||||| Sbjct 5344347 TTCAAAACGTTGGAGAGGTCCTATTTGCTTAAGATCAAGGGTAAGATCGTGGAACGTCCC 5344288 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGA 248942 ||||||||||||||||| ||||| |||| |||||| ||| ||||| || Sbjct 5344287 CAGCACATGTTGATGCGCGTGGCCATCGGTATTCACGGGGAAGACATCGA 5344238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073732900166080