Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1315 165 7e-36 seq1183 165 7e-36 >seq1315 Length=4632993 Score = 165 bits (182), Expect = 7e-36 Identities = 244/338 (72%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATC-GTCCAGGCACGCC--ACCTCT 5560 ||||| || || || ||||| ||| | |||||| || ||| | || | ||||| Sbjct 1283531 CCCGTAGAACCAAACCCGCCACTGCCCCGTTCCGTTTCCGTCAA---ACTGCTAACCTCC 1283587 Query 5561 TCCACATCGGGGAACGCAGCG-CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| || ||| | | || ||||||||||| | |||||| || || || ||| Sbjct 1283588 TCCAGCTCCGGGTA-GAAGATTCGCTCGCAGATAAACTGCGCAATGCGATCACCCCGAGC 1283646 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 |||| ||| ||||||| ||||| |||||||| |||||| |||| ||||| |||||| Sbjct 1283647 CACCTTGAATTCGTTGT--CCGAATGGTTGAACAACACCACACCCAGATTGCCACGGTAG 1283704 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || | || | ||||| |||||||| |||||||||| ||| || |||| ||||| || Sbjct 1283705 TCCTCATCGACGACGCCGGCGCCCACATCGATGAAGTTCTTCACGGCCAATCCGGATCGA 1283764 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACT 5797 ||||| || |||||||||||||| || |||||||| | ||| | ||| || | |||| Sbjct 1283765 GGAGCAACCCGGCCGTAGCACCCCTCCGGAAGCTGCACCTGAATGTCGGTCATGACCAGC 1283824 Query 5798 CGCCGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCT 5835 || |||| ||| || || || | ||| | ||||| Sbjct 1283825 TGCTTGCCGCGCGCCGGAACCGTGTACTCGTATGCGCT 1283862 >seq1183 Length=7533919 Score = 165 bits (182), Expect = 7e-36 Identities = 246/343 (72%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATC-GTCCAGGCACGCCACCTCTTC 5562 || || || || || ||||| ||||| |||||| || ||| | || ||||| || Sbjct 582856 CCAGTAGAACCAAAACCGCCGCTGCCTCGTTCCGTTTCCGTCAAACTACTA-ACCTCCTC 582914 Query 5563 CACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 || || ||| | | ||||||||||| | |||||| || || || ||| || Sbjct 582915 CAGCTCCGGGTAAAAAATCCGCTCGCAGATAAACTGCGCAATGCGATCACCCCGGGCCAC 582974 Query 5623 CTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCG 5680 || ||| ||||||| ||||| |||||||||||||||||||| ||||| |||||||| Sbjct 582975 CTTGAATTCGTTGT--CCGAATGGTTGAACAGCACCACGCCCAGATTGCCACGGTAGTCC 583032 Query 5681 GCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGA 5740 | || | ||||| |||||||| |||||||||| ||| || |||| ||||| |||||| Sbjct 583033 TCATCGACGACGCCGGCGCCCACATCGATGAAGTTCTTCACGGCCAATCCGGATCGGGGA 583092 Query 5741 GCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGC 5800 || || || ||||| ||||| || || ||||| | ||| | ||| || | | || || Sbjct 583093 GCAACACGCCCGTAACACCCCTCCGGTAGCTGCACCTGAATGTCGGTCATGATCAGCTGC 583152 Query 5801 CGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGC-AGAGG 5842 |||| ||| || || || | ||| | ||||| | ||||| Sbjct 583153 TTGCCGCGCGCCGGAACCGTGTACTCGTACGCGCTACGAGAGG 583195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430041637463720