Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq477 93.3 3e-14 seq1930 86.0 5e-12 seq1920 82.4 6e-11 seq614 82.4 6e-11 >seq477 Length=2976132 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| ||| || || |||||| || ||||||||||| | | Sbjct 2306124 CCTCCACGCAGACGCAGGACCAGATGAAGGGTACTCTCCTTCTGGATGTTGTAGTCCGAC 2306183 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || ||||| ||| | || | || || || ||| ||| Sbjct 2306184 AGGGTACGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGTTGCTGATCCGGAGGG 2306243 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || || ||| ||||| | | | || || ||| || Sbjct 2306244 ATGCCCTCCTTATCCTGGATCTTGGCT--TTCACATTCTCGATGGTATCCGAGGGTTCGA 2306301 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||| || |||||||| ||||||||||| Sbjct 2306302 CCTCCAAGGTGATGGTCTTACCGGTTAGGGTTTTGACGAAAATCTGCAT 2306350 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| ||| || ||| ||||| || ||||||||||| | | Sbjct 2303160 CCTCCACGGAGACGCAGGACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTCCGAC 2303219 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || || || || | || | ||||| || || ||| Sbjct 2303220 AGGGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 2303279 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || |||||| | | | || || ||| || Sbjct 2303280 ATGCCTTCCTTATCTTGGATCTTGGC--CTTCACGTTCTCAATGGTATCCGAGGGTTCGA 2303337 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||||||| |||||||| || ||||| |||||||||||| Sbjct 2303338 CCTCCAAGGTGATGGTTTTACCGGTCAGGGTCTTGACGAAAATCTGCATT 2303387 >seq1930 Length=1715699 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| |||||| ||| |||||| || ||||||||||| | | Sbjct 814212 CCTCCACGGAGACGCAGGACCAAATGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCCGAC 814153 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| || || || || | || | ||||| ||||| ||| Sbjct 814152 AGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGAGGG 814093 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || || || ||| | ||| || | | | ||| || ||| || Sbjct 814092 ATACCTTCCTTATCCTGAATCTTGGCCTTGACGTTTTCAATAGTATCCGAGGGTTCGACC 814033 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| || || || || ||||| || |||||||| Sbjct 814032 TCCAAGGTGATGGTTTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 813986 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| ||| || || |||||| || ||||||||||| | | Sbjct 811704 CCTCCACGCAGACGCAGAACCAAATGGAGGGTACTCTCCTTCTGGATGTTGTAGTCCGAC 811645 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || ||||| || | || | || || || ||| ||| Sbjct 811644 AGGGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGTTGCTGATCCGGAGGG 811585 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || || || |||||| | | | || || ||| || Sbjct 811584 ATGCCCTCCTTATCCTGGATCTTGGC--CTTCACATTTTCGATGGTATCCGAGGGTTCGA 811527 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||| || ||||| || ||||||||||| Sbjct 811526 CCTCCAAGGTGATGGTCTTACCGGTTAGGGTTTTTACGAAAATCTGCAT 811478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| ||| || ||| |||||| || || |||||||| | | Sbjct 813300 CCTCCACGCAGACGCAGAACCAGATGAAGAGTGCTCTCCTTCTGGATATTGTAGTCCGAC 813241 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| |||||||| || | || | ||||| || || ||| Sbjct 813240 AGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 813181 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || || || || ||| || | | | ||| || |||||| Sbjct 813180 ATACCTTCCTTATCCTGGATCTTAGC--CTTGACGTTTTCGATAGTATCCGAGGGCTCAA 813123 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| || ||||| || ||||| || || ||||| Sbjct 813122 CCTCCAAGGTGATGGTTTTACCAGTCAGGGTCTTGACGAAGATTTGCAT 813074 >seq1920 Length=2021614 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || ||||| ||||| || ||||||||||||| | Sbjct 83963 CCACCACGGAGACGCAGCACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 84022 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || || || || | || || ||||| || || || Sbjct 84023 AGGGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 84082 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | ||||| ||||| Sbjct 84083 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCGATGGTGTCCGATGGCTCGA 84140 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || || || || || ||||| || |||||||| ||| Sbjct 84141 CCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCATCTTG 84193 >seq614 Length=1305929 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || ||||| ||||| || ||||||||||||| | Sbjct 17975 CCACCACGGAGACGCAGCACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 17916 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || || || || | || || ||||| || || || Sbjct 17915 AGGGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 17856 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | ||||| ||||| Sbjct 17855 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCGATGGTGTCCGATGGCTCGA 17798 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || || || || || ||||| || |||||||| ||| Sbjct 17797 CCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCATCTTG 17745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405075978380650