Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1902 178 2e-39 seq175 178 2e-39 seq1662 174 3e-38 seq95 163 5e-35 >seq1902 Length=3516739 Score = 178 bits (196), Expect = 2e-39 Identities = 287/412 (70%), Gaps = 3/412 (1%) Strand=Plus/Minus Query 42610 TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 ||||||| ||||| || | | ||||| | |||||||| || ||||||||||| |||| Sbjct 3490543 TGTTCAATGCCATCGATAATCTACCCTGTGTGAAGAAGAAAGCAGACTGGGCGCTGAACT 3490484 Query 42670 GGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 ||||| ||| | || | || || ||| | |||| |||||| ||||||| || | Sbjct 3490483 GGATCTCCAGTAAGCAGGCTAATTTTGGAGAGCGCGTGGTCGCCTTTGCCGCCGTGGAAG 3490424 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGC 42789 ||||||||||| || ||| || ||||| || ||||||||| || | ||||| Sbjct 3490423 GCATCTTCTTCAGCGGTAGCTTTGCGTCCATATTTTGGCTCAAGAAGCGCGGCCTGATGC 3490364 Query 42790 CCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTG 42849 |||| || || ||||| ||||| || ||| | | |||||||| || || | |||||||| Sbjct 3490363 CCGGCCTTACTTTCTCCAACGAGCTGATCTCCCGTGACGAGGGCCTACACACGGACTTTG 3490304 Query 42850 CCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCA 42909 | ||||| ||||| | | || || || || ||| |||| || || | | Sbjct 3490303 CTTGCCTTATGTTC---AAATATCTGGTTCAGAAACCGTCGCAGGAACGTGTGATTGAAA 3490247 Query 42910 TCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCC 42969 ||||| ||| || ||| ||| ||| |||||||| | ||| | | || || || Sbjct 3490246 TCATCCGGGAAGCAGTGCTGATTGAGCAGGAGTTCTTGACGAAAGCCCTTCCGGTTGATT 3490187 Query 42970 TGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 || | ||||||||| ||| || |||| |||||||| | | ||| ||||| Sbjct 3490186 TGCTTGGCATGAACTGCGAACTGATGTCGCAGTACATCGAATTCGTGGCCGA 3490135 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||| |||||||| || || || || || || |||||||| | | |||||| Sbjct 3495093 CTGGCCTTTTTCGCCGCTTCCGATGGTATTGTGAACGAGAACCTCGTCGAACGGTTCAGC 3495034 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||| ||| | |||||||| ||||||||||| ||||| || || || || ||| Sbjct 3495033 CAGGAGGTTCAGGTCACCGAGGCGCGTTGCTTCTACGGGTTCCAAATTGCGATGGAAAAC 3494974 Query 42543 GTGCACTCTGAGGTGTA 42559 |||||| ||| |||| Sbjct 3494973 GTGCACAGTGAAATGTA 3494957 >seq175 Length=5193165 Score = 178 bits (196), Expect = 2e-39 Identities = 851/1332 (64%), Gaps = 57/1332 (4%) Strand=Plus/Minus Query 244300 CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGG 244359 |||||||||| |||| || | || |||||||| |||| || | || || ||| | Sbjct 3013651 CCACATGTCATACTGTAGAATTCCTTTGCTGACCGGGCAACCAGCATAAGTTTCGTATGT 3013592 Query 244360 ACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAA 244419 || || | ||||| | ||||| | || ||||| | |||||||| |||||||| Sbjct 3013591 GCCTTCTTTTTCCGCCAGTTCGCAGCTGGCTTCAAGGGCACCATAGTAGATTGTCTCGAA 3013532 Query 244420 GATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAA 244479 ||| | ||| | | |||| | ||| | | | || | ||||| ||||| Sbjct 3013531 AATCTGTTGGTTTAGCTTCTGGGCTTCTTCGCTGTCGTAAGGATAACGCATCAGAATGAA 3013472 Query 244480 GACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCAT 244539 | ||||||| |||||| ||||| || || || || | ||| ||| ||||||| || | Sbjct 3013471 CGCATCGGCCATTCCCTGGACGCCAATTCCAATCGGGCGGTGGCGCATGTTGGACCGTTT 3013412 Query 244540 GGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA- 244598 ||| || ||||| || || || ||| |||||| | |||||||| || |||| || Sbjct 3013411 GGCCTCCGGCACCGGATAGAAATTGATGTCGATGATTTTGTTGAGATTCTTGGTGG-CAG 3013353 Query 244599 -TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTG 244657 | ||| || || ||| ||| |||||||| || || | || ||| Sbjct 3013352 TTTTGGAT-ACTTCTTTCAGTTTCTGGAAGTCGTAT--GT-------CTTGTCG--GGTT 3013305 Query 244658 ATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAG 244717 |||| ||| ||| | |||| ||||| ||||| ||||| | || || Sbjct 3013304 ----TCACGAACATGTTTAACGCGATAGACGCCAGATTGCAAACGGCAATTTCATCTTTT 3013249 Query 244718 TTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGG 244777 || ||| | || || |||||||| ||||| |||||||||||||| | || || Sbjct 3013248 GAGGAGTATTCCACGATTTCGGTGCACAGGTTCGAACACTTGATGGTGCCGATGTTTTGC 3013189 Query 244778 TGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGC 244837 || ||| ||| |||||| |||||||| || |||||| | || | ||||| || | Sbjct 3013188 TGGTTGCTCTTTCGGTTGCAAGCGTCCTTATATAGCATGTATGGAACTCCGGTTTCAACT 3013129 Query 244838 TGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGC-GAGCCTTGC 244895 |||| | | | ||| | ||| || || || || ||| | | | || || | Sbjct 3013128 TGGGATTCAATAATCGC-GAACCACAGATCTTGCGCTTTCACCTTGCGGATGAACCGA-C 3013071 Query 244896 CCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGC 244955 | || || |||||| |||||||| || |||||| |||||| || || | Sbjct 3013070 CTTCCGCTTCGTAGGATGTGTACAGTTTTTCAAACTCGTCGCCCCACGTATCAGATAATC 3013011 Query 244956 CGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGA 245015 | || || ||||||||| | | ||| || || | | | || | | ||||| Sbjct 3013010 CAGGACATTCGTGCGGGCACATCAAGCACCAGTCTTCGTTGGCTTCCACTCGTTTCATGA 3012951 Query 245016 AGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC--TCGTCCGAGCC 245073 | || || || ||||| || || | ||| | |||||| | ||| | || |||| ||| Sbjct 3012950 ACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCTAG--CTCGGACATCTTCCGCGCC 3012893 Query 245074 AGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGAC 245133 |||||||| ||| |||| || || || || || | ||||| ||||||| |||| Sbjct 3012892 TGTGTTCTTTTTCAAATCCAGGAACTCGAACACATCTCCATGCCACGGCTCCAGATAGAT 3012833 Query 245134 AGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAA 245193 || | || || |||| ||||||||||||||| ||||| | | | ||| | Sbjct 3012832 GGCAAATGCACCAGGCCTCTTGTTGCCTCCCTGATCCACGTACTTGGCCGTATTATTGTA 3012773 Query 245194 GATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC 245253 | | || | || | | ||||| ||| ||||||||| || ||||||| || Sbjct 3012772 CACCCTCAACATCGGAATCAATCCGTTGGAGATGCCGTTGGTCCCAGCAATGTAGGTTCC 3012713 Query 245254 CTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGA 245309 ||| | || || ||| | || |||| || | ||||||||| ||||| || | Sbjct 3012712 CTT--CGCT-CGGATGCAG-TGCACATTCAAACCAATACCGCCGGCGGATTTGGAAATCA 3012657 Query 245310 GGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCA 245369 || || || | || || || ||||| ||||| || ||||| | | || Sbjct 3012656 ACGCACACTGTTTCAACGTATCGTAGATACCCTCAATGCTATCGTCGCTCATGGTCAACA 3012597 Query 245370 GAAAGCAGGAGGACAGCTGGGGC-------TTGGGGCTGCACGAGTTGAACAGAGTGGGG 245422 | |||||||| || | ||| ||| ||| ||| ||| |||| || || Sbjct 3012596 GGAAGCAGGACGATAACTGAGGCCTACACGTTGCGGCCGCA-------AACATGGTAGGC 3012544 Query 245423 CTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATG 245482 |||||||| ||||| | ||| || || || |||| | ||||||||| Sbjct 3012543 GAAGCGTGGGTGAAGTATCTCTCCGACAGCAAGTTATATGTCTCAATGGCCGCGTCGATG 3012484 Query 245483 TTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGG-CGT--CTCGAT 245538 | || ||||| || | ||| ||| | ||| | |||||||||| ||| | |||| Sbjct 3012483 TCTTCCCCGTGAATACCGATGGC-CACGCGCATCAACATGTGCTGGGGACGTTCCACGAT 3012425 Query 245539 GGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGA 245598 |||| | ||| |||| ||||| ||||| | ||| ||||| || ||||| Sbjct 3012424 CTTACCCTTG---ATCTTAAGCAGATAGGACCGCTCCAACGTTTTGAAGCCGAAGTAGTT 3012368 Query 245599 GTAGCCAAAGTC 245610 |||||||||||| Sbjct 3012367 GTAGCCAAAGTC 3012356 >seq1662 Length=3905379 Score = 174 bits (192), Expect = 3e-38 Identities = 286/412 (69%), Gaps = 3/412 (1%) Strand=Plus/Plus Query 42610 TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 ||||||| ||||| || | | ||||| | |||||||| || ||||||||||| |||| Sbjct 1651529 TGTTCAATGCCATCGATAATCTACCCTGTGTGAAGAAGAAAGCAGACTGGGCGCTGAACT 1651588 Query 42670 GGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 ||||| ||| | || | || || ||| | |||| ||||| ||||||| || | Sbjct 1651589 GGATCTCCAGTAAGCAGGCTAATTTTGGAGAGCGCGTGGTCGCCTTCGCCGCCGTGGAAG 1651648 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGC 42789 ||||||||||| || ||| || ||||| || ||||||||| || | ||||| Sbjct 1651649 GCATCTTCTTCAGCGGTAGCTTTGCGTCCATATTTTGGCTCAAGAAGCGCGGCCTGATGC 1651708 Query 42790 CCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTG 42849 |||| || || ||||| ||||| || ||| | | |||||||| || || | |||||||| Sbjct 1651709 CCGGCCTTACTTTCTCCAACGAGCTGATCTCCCGTGACGAGGGCCTACACACGGACTTTG 1651768 Query 42850 CCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCA 42909 | ||||| ||||| | | || || || || ||| |||| || || | | Sbjct 1651769 CTTGCCTTATGTTC---AAATATCTGGTTCAGAAACCGTCGCAGGAACGTGTGATTGAAA 1651825 Query 42910 TCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCC 42969 ||||| ||| || ||| ||| ||| |||||||| | ||| | | || || || Sbjct 1651826 TCATCCGGGAAGCAGTGCTGATTGAGCAGGAGTTCTTGACGAAAGCCCTTCCGGTTGATT 1651885 Query 42970 TGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 || | ||||||||| ||| || |||| |||||||| | | ||| ||||| Sbjct 1651886 TGCTTGGCATGAACTGCGAACTGATGTCGCAGTACATCGAATTCGTGGCCGA 1651937 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||| |||||||| || || || || || || |||||||| | | |||||| Sbjct 1649798 CTGGCCTTTTTCGCCGCTTCCGATGGTATTGTGAACGAGAACCTCGTCGAACGGTTCAGC 1649857 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||| ||| | |||||||| ||||||||||| ||||| || || || || ||| Sbjct 1649858 CAGGAGGTTCAGGTCACCGAGGCGCGTTGCTTCTACGGGTTCCAAATTGCGATGGAAAAC 1649917 Query 42543 GTGCACTCTGAGGTGTA 42559 |||||| ||| |||| Sbjct 1649918 GTGCACAGTGAAATGTA 1649934 >seq95 Length=6909593 Score = 163 bits (180), Expect = 5e-35 Identities = 571/879 (65%), Gaps = 27/879 (3%) Strand=Plus/Plus Query 244300 CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGG 244359 |||||||||| |||| || | ||| |||||||| |||| || | || || ||| | Sbjct 5343076 CCACATGTCATACTGTAGAATCCCTTTGCTGACCGGGCAACCAGCATAAGTTTCGTATGT 5343135 Query 244360 ACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAA 244419 || || | ||||| | ||||| | || ||||| | |||||||| |||||||| Sbjct 5343136 GCCTTCTTTTTCCGCCAGTTCGCAGCTGGCCTCAAGGGCACCATAGTAGATTGTCTCGAA 5343195 Query 244420 GATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAA 244479 ||| | ||| | | |||| | ||| | | | || | ||||| ||||| Sbjct 5343196 AATCTGTTGGTTTAGCTTCTGGGCTTCTTCGCTGTCGTAAGGATAACGCATCAGAATGAA 5343255 Query 244480 GACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCAT 244539 | ||||||| |||||| ||||| || || || || | ||| ||| ||||||| ||| | Sbjct 5343256 CGCATCGGCCATTCCCTGGACGCCAATTCCAATCGGGCGGTGACGCATGTTGGACCGCTT 5343315 Query 244540 GGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA- 244598 ||| || ||||| || || || ||| |||||| | |||||||| || |||| || Sbjct 5343316 GGCCTCCGGCACCGGATAGAAATTGATGTCGATGATTTTGTTGAGATTCTTGGTGG-CAG 5343374 Query 244599 -TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTG 244657 | ||| || || || ||| |||||||| || || | || ||| Sbjct 5343375 TTTTGGAT-ACTTCTTTCAATTTCTGGAAGTCGTAT--GT-------CTTGTCG--GGTT 5343422 Query 244658 ATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAG 244717 |||| ||| ||| | |||| ||||| ||||| ||||| | || ||| Sbjct 5343423 ----TCACGAACATGTTTAACGCGATAGACGCCAGATTGCAAACGGCAATTTCATCCTTT 5343478 Query 244718 TTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGG 244777 || ||| | |||||||| ||||| | ||| |||||||||||||| | | || Sbjct 5343479 GAGGAGTATTCCACAATCTCAGTGCACAAGTTCGAACACTTGATGGTGCCGATATTTTGT 5343538 Query 244778 TGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGC 244837 || ||| ||| ||||| ||||| |||||||||||| | || | ||||| || | Sbjct 5343539 TGGTTGCTCTTTCGATTGCAAGCGTCTTTGTAGAGCATGTATGGAACTCCGGTTTCAACT 5343598 Query 244838 TGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGC-GAGCCTTGC 244895 || | | | | ||| ||| | ||| || || ||| | | | || || | | Sbjct 5343599 TGAGACTCAATAATCGCAAA-CCACAAATCCTGGGCTTTCACCTTGCGGATGAACCGT-C 5343656 Query 244896 CCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGC 244955 | || || |||||| ||||||| || || ||| |||||| || || || Sbjct 5343657 CTTCCGCTTCGTAGGATGTGTACAATTTTTCAAATTCGTCGCCCCACGTATCCGATAAGC 5343716 Query 244956 CGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGA 245015 | || || ||||||||| | | ||| || || | | | || | | ||||| Sbjct 5343717 CAGGACATTCATGCGGGCACATCAAGCACCAGTCTTCGTTGGCTTCCACTCGTTTCATGA 5343776 Query 245016 AGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC--TCGTCCGAGCC 245073 | || || || ||||| || || | ||| | |||||| | ||| | || |||| ||| Sbjct 5343777 ACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCTAG--CTCGGACATCTTCCGCGCC 5343834 Query 245074 AGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGAC 245133 |||||||| ||| |||| || || || || || | ||||| ||||| | |||| Sbjct 5343835 TGTGTTCTTTTTCAAATCCAGGAACTCGAACACATCTCCATGCCACGGCTCGAGATAGAT 5343894 Query 245134 AGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 || | || || |||| ||||||||||||||| ||||| Sbjct 5343895 GGCAAATGCACCAGGCCTCTTGTTGCCTCCCTGATCCAC 5343933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944310456675600