Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq95 111 2e-19 seq175 104 2e-17 >seq95 Length=6909593 Score = 111 bits (122), Expect = 2e-19 Identities = 945/1514 (62%), Gaps = 59/1514 (4%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||| | ||||||||| |||||| ||| || | || ||||| | || | | Sbjct 5344362 TACAACTACTTCGGCTTCAAAACGTTGGAGAGGTCCTATTTGCTTAAGATCAAGGGTAAG 5344303 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 | || || || || || || |||||||||| |||||||| |||||||| | ||| Sbjct 5344302 ATCGTGGAACGTCCCCAGCACATGTTGATGCGCGTGGCCATCGGTATTCACGGGGAAGAC 5344243 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACAT-----GCGGGACAAGAGGTATACCATG- 93891 || ||| |||| | || ||| | || || | |||| || || Sbjct 5344242 AT--CGAC------GCGGCCATTGAGACATATAACTTGCTGTCGGAGAGATACTTCACTC 5344191 Query 93892 --GCCACCCCGACCCTGTTCAACGCGGGGACCCCG-GT--GCCACAGATGTCTTCGTGTT 93946 || | || ||| |||| |||| | || || ||||||| | || || || | Sbjct 5344190 ACGCTTCGCCTACCATGTTT---GCGGCCGCAACGTGTAGGCCACAGTTATCGTCCTGCT 5344134 Query 93947 TCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTG 94006 ||||| |||| | | | ||| ||| || || | ||| | | || | |||| Sbjct 5344133 TCCTGTTGACCATGAGCGACGATAGCATTGAGGGCATCTACGATACGTTGAAACAGTGTG 5344074 Query 94007 CGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGG 94066 || || || |||| ||| || || || || | | ||| ||| | | || |||| | Sbjct 5344073 CGTTGATTTCCAAATCCGCCGGCGGTATTGGTTTGAATGTGCACTGCATCCGAGCCAAAG 5344014 Query 94067 GTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCT 94126 | ||||||| ||| || || |||| ||||||||| | | || ||| | |||| | Sbjct 5344013 GAACCTACATTGCCGGAACTAACGGCATCTCCAACGGATTGATTCCGATGTTGAGGGTGT 5343954 Query 94127 TCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGG 94186 ||| || |||| |||||||| ||||| || | |||| ||| | || || Sbjct 5343953 ACAATAATACGGCTAAGTACGTGGATCAGGGAGGCAACAAGAGGCCTGGTGCATTTGCCA 5343894 Query 94187 TCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACG 94246 ||||||||||||| ||||| | || ||| | ||| | || || ||||||| | Sbjct 5343893 TCTATCTCGAGCCGTGGCATGGAGATGTGTTCGAGTTCCTGGATTTGAAAAAGAACACAG 5343834 Query 94247 GCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306 || || | | || || ||| | |||||||| || ||| | || || || || | Sbjct 5343833 GCGCGGAAGATGTCCGAGCTAGGGACATGTTCTACGCGCTGTGGATTCCGGATCTGTTCA 5343774 Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366 ||||||| || || ||| | |||| | | | || || |||||||||| || Sbjct 5343773 TGAAACGAGTGGAAGCCAACGAAGACTGGTGCTTGATGTGCCCGCATGAATGTCCTGGCT 5343714 Query 94367 TGTCCGACGTTTGTGGATCG-CGT-TTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG 94424 | || || | |||| || || |||||| | ||||| | |||||| || | || Sbjct 5343713 TATCGGA--TACGTGGGGCGACGAATTTGAAAAATTGTACACATCCTACGAAGCGGAAGG 5343656 Query 94425 CAAGGCCA---GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACA 94481 | || | ||||| | | | |||| ||||| | ||| | || || Sbjct 5343655 ACGGTTCATCCGCAAGGTGAAAGC--CCAGGATT-TGTGGTTTGCGATTATTGAGTCTCA 5343599 Query 94482 GGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCA 94541 || || || || || ||||| | | ||| ||| || ||| ||| |||||| Sbjct 5343598 AGTTGAAACCGGAGTTCCATACATGCTCTACAAAGACGCTTGCAATCGAAAGAGCAACCA 5343539 Query 94542 GCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTC 94601 || | |||| |||||| | ||||| ||||||| |||||||| || ||||| | Sbjct 5343538 ACAAAATATCGGCACCATCAAGTGTTCGAACTTGTGCACTGAGATTGTGGA--ATACTCC 5343481 Query 94602 TCC--GGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA 94659 || ||| || ||||| || || || |||| || ||| | || |||||| | Sbjct 5343480 TCAAAGGATGAAATTGCCGTTTGCAATCTGGCGTCTATCGCGTTAAACATGTTCGTGAAA 5343421 Query 94660 GATGCCTACACGTC-TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG 94718 || ||| | | ||| |||| || || || | || | | ||| Sbjct 5343420 C---CCGACAAGACATACGACTTCCAGAAATTGAAAGAAGTATCCAAAACTGCCACCAAG 5343364 Query 94719 GATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGA 94778 || || |||| | ||||||| || ||||| || || |||||||| | Sbjct 5343363 AAT----------CTCAACAAAATCATCGACATCAATTTCTATCCGGTGCCGGAGGCCAA 5343314 Query 94779 GAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCT 94838 | || ||| || || || || || || || ||||||||||| | || || ||| | Sbjct 5343313 GCGGTCCAACATGCGTCACCGCCCGATTGGAATTGGCGTCCAGGGAATGGCCGATGCGTT 5343254 Query 94839 GGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATT 94898 | |||||||| || |||||| | || || | | || | || || Sbjct 5343253 CATTCTGATGCGTTATCCTTACGACAGCGAAGAAGCCCAGAAGCTAAACCAACAGATTTT 5343194 Query 94899 CGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCG 94957 ||| | || || || || ||| | || | | | | ||| ||| | || ||| Sbjct 5343193 CGAGACAATCTACTATGGTGCCCTTGAGGCCAGCTGCGAACT-GGCGGAAAAAGAAGGCA 5343135 Query 94958 GGCCACACGAATCGTTCCGCGGATCGCCC--TTGGAACAGGGCATTTTTCAGTTCGACCT 95015 || ||||| | || || | | |||| | | | |||| ||| | |||| ||| | Sbjct 5343134 ---CATACGAAAC-TTATGCTGGTTGCCCGGTCAGCAAAGGG-ATTCTACAGTATGACAT 5343080 Query 95016 CTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAA 95075 ||| | | | ||| | | | ||| ||||||| ||| || | | | | ||| Sbjct 5343079 GTGGAATAAGGAACCCACAGATTTGTGGGACTGGGCCGCTTTAAAAGATAAGATCGCCAA 5343020 Query 95076 ACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGAT 95135 |||||| || || |||||||| |||| || ||||| ||||| || || || || || Sbjct 5343019 ACACGGAGTTCGCAATTCGCTGCTTTTGGCGCCTATGCCGACGGCTTCGACCGCACAAAT 5342960 Query 95136 CCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCT 95195 || |||||||||||||| || ||||| | ||| |||||||| |||||| | || || || Sbjct 5342959 TCTCGGCAACAACGAGTCCTTTGAACCGTACACTTCCAACGTTTACAACCGACGAGTACT 5342900 Query 95196 CGCCGGGGAATTCC 95209 |||| ||||||| Sbjct 5342899 GTCCGGTGAATTCC 5342886 >seq175 Length=5193165 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||||||||| || || |||| ||| |||| || ||||| ||||| || || || || Sbjct 3013705 CAAACACGGAGTTCGCAATTCGCTTCTTTTGGCGCCTATGCCGACGGCTTCGACCGCACA 3013764 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 || || |||||||||||||| || ||||| | ||| |||||||| |||||| | || || Sbjct 3013765 AATTCTCGGCAACAACGAGTCCTTTGAACCGTACACTTCCAACGTTTACAACCGACGAGT 3013824 Query 95193 GCTCGCCGGGGAATTCC 95209 || |||| ||||||| Sbjct 3013825 ACTGTCCGGTGAATTCC 3013841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494708141862600