Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1353 152 4e-32 seq390 140 2e-28 seq1328 118 8e-22 >seq1353 Length=2923645 Score = 152 bits (168), Expect = 4e-32 Identities = 228/321 (71%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 ||||||||||| || || ||||| ||||||||| | ||| ||||||||||||||| ||| Sbjct 1882114 GCCGGGTTCGGCGTTACTGCCGGTGTCCATCGGCTATGGTGCCACAAAGCCTACAAAGCC 1882173 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| | ||| | | ||| | |||| |||| | || || |||||||||||| Sbjct 1882174 AAACTGCCGCTAAGGATCATTCTGATGTGCTGCTACTCGATCGCCGGCCAGAACACCATC 1882233 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCC 108518 | ||||||| ||| ||| | | || ||||||||||| || || ||||| ||| || Sbjct 1882234 TACGACTGGGTGCGCGACCACCGCATCCATCACAAGTACTCGGAGACGGACGG-CGATCC 1882292 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGA 108578 ||| ||| ||||| |||| ||| || | | ||||| || ||||| ||| || ||| | Sbjct 1882293 ACATAACTCCAACCGGGGCTTCCTGTACGCACACGTCGGCTGGCTTATGCTGCGAAAGCA 1882352 Query 108579 CCCCGACGTGATCTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGT 108638 |||||| ||| | || || || |||||||| ||||| | ||||||||| Sbjct 1882353 CCCCGAATGCATCAAGAAAGGCCGGCTCATCGACATGACTGACATCACCAGCGATCCGGT 1882412 Query 108639 GGTAGTGTGGCACACCAAGTA 108659 || || ||| |||||| Sbjct 1882413 AGTCCAGTTCCACCACAAGTA 1882433 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 108859 GAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTG 108918 || ||||| |||||| | || ||| |||||||||| |||||||||||||| |||||| Sbjct 2042526 GAGAACAAGACGGTGGCCACATTCGCTTTCGGCGAGGGCTGGCACAACTACCATCACGTG 2042585 Query 108919 TTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGAC 108957 ||||||| ||||||||| | ||||| |||| ||| || Sbjct 2042586 TTCCCCTGGGACTACAAGACGGCCGAACTGGGCAACTAC 2042624 >seq390 Length=4179939 Score = 140 bits (154), Expect = 2e-28 Identities = 180/246 (73%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 ||||||||||| || || ||||| ||||| ||| | ||| ||||||||||||||| ||| Sbjct 3016183 GCCGGGTTCGGCGTTACAGCCGGTGTCCACCGGCTATGGTGCCACAAAGCCTACAAAGCC 3016242 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| | ||| | | ||| | |||| |||| | || || |||||||||||| Sbjct 3016243 AAACTGCCGCTAAGGATCATTCTGATGTGCTGCTACTCGATCGCCGGCCAGAACACCATC 3016302 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCC 108518 | ||||||| ||| ||| | | || ||||||||||| || || ||||| ||| || Sbjct 3016303 TACGATTGGGTGCGCGACCACCGCATCCATCACAAGTACTCGGAGACGGACGG-CGATCC 3016361 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGA 108578 ||| ||| ||||| |||| ||| || | | || || || ||||| ||| || ||| | Sbjct 3016362 ACATAACTCCAACCGGGGCTTCCTGTACGCACATGTCGGCTGGCTTATGCTGCGAAAGCA 3016421 Query 108579 CCCCGA 108584 |||||| Sbjct 3016422 CCCCGA 3016427 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 108859 GAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTG 108918 || ||||| |||||| | || ||| |||||||||| |||||||||||||| |||||| Sbjct 3180568 GAGAACAAGACGGTGGCCACATTCGCTTTCGGCGAGGGCTGGCACAACTACCATCACGTG 3180627 Query 108919 TTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGAC 108957 ||||||| ||||||||| | ||||| |||| ||| || Sbjct 3180628 TTCCCCTGGGACTACAAGACGGCCGAACTGGGCAACTAC 3180666 >seq1328 Length=2750963 Score = 118 bits (130), Expect = 8e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 108346 TTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCC 108405 ||||| | |||||||| | ||||| ||||| ||||||| || |||||||||| Sbjct 1413799 TTCGGCATCACGGCCGGTGCTCATCGTCTGTGGTCCCACAAGGCTTACAAGGCCAAGTGG 1413740 Query 108406 CCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAG 108465 ||| || || || | ||| | | | || | || ||||||| ||| || Sbjct 1413739 CCGCTCCGGTTGATACTGATGATCTCGCAGACGCTAGCCTTCCAGAACAGTATCTACGAG 1413680 Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||||| |||||| |||| || ||||||| | | || ||| ||||| || |||||| Sbjct 1413679 TGGGTGCGGGATCACCGGGTGCATCACAAGTTCACCGATACGGATGCCGATCCGCACAAC 1413620 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 ||||| | || |||| ||||||||| | || ||||| ||||||| ||| |||| ||| Sbjct 1413619 GCCAAGCGAGGTTTCTTCTTCTCGCACATCGGCTGGCTGATGATGAAGAAGCACCCGGAC 1413560 Query 108586 GTG 108588 ||| Sbjct 1413559 GTG 1413557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381761470295640