Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1902 150 3e-31 seq95 150 3e-31 seq1662 147 3e-30 seq175 147 3e-30 >seq1902 Length=3516739 Score = 150 bits (166), Expect = 3e-31 Identities = 240/341 (70%), Gaps = 5/341 (1%) Strand=Plus/Plus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803 ||||| || || ||||| ||||||||||| || | ||||| | || ||||| || || | Sbjct 3490125 CAGCAGTCTATCGGCCACGAATTCGATGTA-CTGCGACATCAGTTCGCAGTTCATGCCAA 3490183 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 ||| ||| || || |||| || || ||||||| ||||||| || ||||| | Sbjct 3490184 GCAAATCAACCGGAAGGGCTTTCGTCAAGAACTCCTGCTCAATCAGCACTGCTTCCCGGA 3490243 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 || | |||||||| | | ||| || | || | | || |||| |||| Sbjct 3490244 TGATTTCAATCACACGTTCCTGCGACGGTTT---CTGAACCAGATATTTGAACATAAGGC 3490300 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | |||||||| ||| || |||||||| || ||||| | ||||||||| | | |||| Sbjct 3490301 AAGCAAAGTCCGTGTGTAGGCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAAGTAAGGC 3490360 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 | ||||| | || ||| ||||||||||| |||| |||||| |||||| || |||| Sbjct 3490361 CGGGCATCAGGCCGCGCTTCTTGAGCCAAAATATGGACGCAAAGCTACCGCTGAAGAAGA 3490420 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAA 160084 | || |||||||| ||||| || || | | ||| |||||| Sbjct 3490421 TGCCTTCCACGGCGGCAAAGGCGACCACGCGCTCTCCAAAA 3490461 >seq95 Length=6909593 Score = 150 bits (166), Expect = 3e-31 Identities = 210/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 203837 GTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 || |||||||| || |||||||||||||| || || ||| || | | || || ||||| Sbjct 5342380 GTTTTGTCCACAGTAAACTGAATGGCGTTAACCGCCGGCTTGGTACGCAAGTAATACATT 5342439 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || || || || ||| ||| ||| ||||| | ||| || || | || || | |||| Sbjct 5342440 CCCGTTTTCAGTCCCATCTTCCAGCCGTAGAAGTGGATCGACGTCAACTTACCGTAGTTG 5342499 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || ||||||| ||| ||||| | || ||| ||| |||||| |||||||| ||||| || Sbjct 5342500 GGCTCGGCCACGTGGATGTTGAACGATTGGGATTGATCGATG-AAGGCGCCGCGATCCGC 5342558 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 ||||| || ||| | | || |||||| ||||||||||||||| ||| || | | | Sbjct 5342559 TGCCATTTTTATACAGCTTTTGACCGAAATTTCCCACACCGTCTTGTACAGATCACGGAT 5342618 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCAT 204123 || || || | |||| | | || ||| ||||| || |||| ||| || Sbjct 5342619 ATGCTGCGGGATTTCTT-CTATGTTCTGAATCGATCCATTGTTGGCAAT 5342666 Score = 100 bits (110), Expect = 5e-16 Identities = 220/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || |||||||| || | |||| || | | |||| ||| | ||||| || | Sbjct 5342884 CTGGAATTCACCGGACAGTACTCGTCGGTTGTAAACGTTGGAAGTGTACGGTTCAAAGGA 5342943 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||||| ||| || ||||| ||||| ||||| || |||| ||||| || Sbjct 5342944 CTCGTTGTTGCCGAGAATTTGTGCGGTCGAAGCCGTCGGCATAGGCGCCAAAAGCAGCGA 5343003 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||| || |||| ||| || | | || | || || |||||| || | | Sbjct 5343004 ATTGCGAACTCCGTGTTTGGCGATCTTATCTTTTAAAGCGGCCCAGTCCCACAAATCTGT 5343063 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435 ||||| | ||||||||| |||| | || |||| ||||| |||| || || Sbjct 5343064 GGGTTCCTTATTCCACATGTCATACTGTAGAATCCCTTTGCTGACCGGGCAACCAGCATA 5343123 Query 204436 CG--TCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAG 204493 | ||| || | || || | ||| ||||| | ||| ||| | | ||| |||| Sbjct 5343124 AGTTTCGTATGTGCCT--TCTTTTTCCGCCAGTTCGCAGCTGGCCTCAAGGGCACCATAG 5343181 Query 204494 TACATGGTCTCAAAGATCTGAACGTTTA 204521 || || ||||| || ||||| ||||| Sbjct 5343182 TAGATTGTCTCGAAAATCTGTTGGTTTA 5343209 >seq1662 Length=3905379 Score = 147 bits (162), Expect = 3e-30 Identities = 239/341 (70%), Gaps = 5/341 (1%) Strand=Plus/Minus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803 ||||| || || ||||| ||||||||||| || | ||||| | || ||||| || || | Sbjct 1651947 CAGCAGTCTATCGGCCACGAATTCGATGTA-CTGCGACATCAGTTCGCAGTTCATGCCAA 1651889 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 ||| ||| || || |||| || || ||||||| ||||||| || ||||| | Sbjct 1651888 GCAAATCAACCGGAAGGGCTTTCGTCAAGAACTCCTGCTCAATCAGCACTGCTTCCCGGA 1651829 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 || | |||||||| | | ||| || | || | | || |||| |||| Sbjct 1651828 TGATTTCAATCACACGTTCCTGCGACGGTTT---CTGAACCAGATATTTGAACATAAGGC 1651772 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | |||||||| ||| || |||||||| || ||||| | ||||||||| | | |||| Sbjct 1651771 AAGCAAAGTCCGTGTGTAGGCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAAGTAAGGC 1651712 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 | ||||| | || ||| ||||||||||| |||| |||||| |||||| || |||| Sbjct 1651711 CGGGCATCAGGCCGCGCTTCTTGAGCCAAAATATGGACGCAAAGCTACCGCTGAAGAAGA 1651652 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAA 160084 | || |||||||| || || || || | | ||| |||||| Sbjct 1651651 TGCCTTCCACGGCGGCGAAGGCGACCACGCGCTCTCCAAAA 1651611 >seq175 Length=5193165 Score = 147 bits (162), Expect = 3e-30 Identities = 209/289 (72%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 203837 GTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 || |||||||| || || ||||||||||| || || ||| || | | || || ||||| Sbjct 3014347 GTTTTGTCCACAGTAAATTGAATGGCGTTAACCGCCGGCTTGGTACGCAAGTAATACATT 3014288 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || || || || ||| ||| ||| ||||| | ||| || || | || || | |||| Sbjct 3014287 CCCGTTTTCAGTCCCATCTTCCAGCCGTAGAAGTGGATCGACGTCAACTTACCGTAGTTG 3014228 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || ||||||| ||| ||||| | || ||| ||| |||||||| |||||| ||||| || Sbjct 3014227 GGCTCGGCCACGTGGATGTTGAAGGATTGGGATTGATCGATGAA-GGCGCCGCGATCCGC 3014169 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 ||||| || ||| | | || |||||| ||||||||||||||| ||| || | | | Sbjct 3014168 TGCCATTTTTATACAGCTTTTGACCGAAATTTCCCACACCGTCTTGTACAGATCACGGAT 3014109 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCAT 204123 || || || | |||| | | || ||| ||||| || |||| ||| || Sbjct 3014108 ATGCTGCGGGATTTCTT-CTATGTTCTGAATCGATCCATTGTTGGCAAT 3014061 Score = 100 bits (110), Expect = 5e-16 Identities = 220/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || |||||||| || | |||| || | | |||| ||| | ||||| || | Sbjct 3013843 CTGGAATTCACCGGACAGTACTCGTCGGTTGTAAACGTTGGAAGTGTACGGTTCAAAGGA 3013784 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||||| ||| || ||||| ||||| ||||| || |||| || || || Sbjct 3013783 CTCGTTGTTGCCGAGAATTTGTGCGGTCGAAGCCGTCGGCATAGGCGCCAAAAGAAGCGA 3013724 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||| || |||| ||| || | | || | || || |||||| || | | Sbjct 3013723 ATTGCGAACTCCGTGTTTGGCGATCTTATCTTTTAAAGCGGCCCAGTCCCACAGATCTGT 3013664 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435 ||||| | | ||||||||| |||| | || |||| ||||| |||| || || Sbjct 3013663 GGGTTCCTTGTTCCACATGTCATACTGTAGAATTCCTTTGCTGACCGGGCAACCAGCATA 3013604 Query 204436 CG--TCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAG 204493 | ||| || | || || | ||| ||||| | ||| ||| | | ||| |||| Sbjct 3013603 AGTTTCGTATGTGCCT--TCTTTTTCCGCCAGTTCGCAGCTGGCTTCAAGGGCACCATAG 3013546 Query 204494 TACATGGTCTCAAAGATCTGAACGTTTA 204521 || || ||||| || ||||| ||||| Sbjct 3013545 TAGATTGTCTCGAAAATCTGTTGGTTTA 3013518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795130997463600