Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1930 87.8 1e-12 seq477 86.0 4e-12 >seq1930 Length=1715699 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| |||||||||| |||||||| || || || || || || | | Sbjct 814440 CCTCCACGGAGACGCAGGACCAAATGCAGTGTGCTTTCCTTCTGAATGTTGTAGTCCGAC 814381 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||| || || || | || || |||||||||||||| | || Sbjct 814380 AGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 814321 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || || || || | | | | ||||| | | ||| || Sbjct 814320 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCCGAGGGTTCGACC 814261 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || || || || || | ||| || ||||||||||||||| Sbjct 814260 TCCAAGGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATG 814213 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || |||| ||| | ||| || ||||| || || || || || | Sbjct 814668 CCTCCACGCAGACGGAGGACCAGATGAAGAGTACTCTCTTTCTGAATGTTGTAGTCCGAT 814609 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||| || || ||| | || || ||||||||||| || | || Sbjct 814608 AGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGAGGG 814549 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||| ||| | || | | || || | | ||| || Sbjct 814548 ATACCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCGATGGTATCCGAGGGTTCGACC 814489 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || ||||| || | ||| || |||||||||||||| Sbjct 814488 TCCAAGGTGATGGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 814442 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||||| || ||||| |||||||||| || ||||| || || || || || || | Sbjct 815124 CCGCCTCTCAGTCGCAGGACCAAATGCAGTGTACTTTCCTTCTGAATGTTGTAGTCAGAG 815065 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| | || || |||||||||||||| | || Sbjct 815064 AGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGTGGG 815005 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || || || || | | | | ||||| | | ||| || Sbjct 815004 ATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCCGAGGGTTCGACT 814945 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || || || || || | ||| || ||||||||||||||| Sbjct 814944 TCCAAGGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATG 814897 >seq477 Length=2976132 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| |||| ||| | ||||||||| || || || || || || | | Sbjct 2303160 CCTCCACGGAGACGCAGGACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTCCGAC 2303219 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| | || || |||||||||||||| | || Sbjct 2303220 AGGGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 2303279 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| || || || || || | || | | || || | | ||| || Sbjct 2303280 ATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATGGTATCCGAGGGTTCGACC 2303339 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| || | || || ||||| |||||||| Sbjct 2303340 TCCAAGGTGATGGTTTTACCGGTCAGGGTCTTGACGAAAATCTGCAT 2303386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347359291264355