Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1105 107 2e-18 seq1107 102 1e-16 seq472 102 1e-16 seq95 102 1e-16 seq1902 96.9 4e-15 seq1662 91.5 2e-13 >seq1105 Length=3041613 Score = 107 bits (118), Expect = 2e-18 Identities = 274/412 (67%), Gaps = 20/412 (5%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 ||| || || || || || | || || | ||| ||||| ||||| ||||| || ||||| Sbjct 1560508 ATCGAACCGTCCCGGACGCAACAGGGCCTTATCCAGGATGTCAACCCGATTGGTAGCGGC 1560567 Query 15947 GATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 | || |||| ||| | | |||||| |||||||| || ||||||||| | Sbjct 1560568 CAGAACTACAACGTTCGTTGTAGTGTTAAAACCGTCCATCTCCACCAGAAGCTGGTTCAA 1560627 Query 16007 AGTTTGTTCCCGTTCATCATT--CGCTGGCA----TACCACCAGCACTGCGTTGCTTTCC 16060 ||| | ||| |||| || ||| | | | |||||| || | | || Sbjct 1560628 AGTGTTCTCCTGTTCCGAATGACCGCCGAAACTTTTTCCACCA------CGCTTCCGACC 1560681 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGCGACTTC 16117 ||||| ||||| || |||||||| | || || || || ||| ||||| | | | Sbjct 1560682 AACGGCGTCAATTTCGTCAATGAACAATATACAGGGGGCGTGCTTT---CGAGCCATTGC 1560738 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 || | ||||||||||| | || ||||||||||||||||||| || | || | Sbjct 1560739 GAACATGTCCCGTACACGGGATGGACCAACACCAACAAACATCTCCAAGAACTCTGATCC 1560798 Query 16178 GGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 || || | ||||||||| ||||| | |||||| || | || ||| ||||| || | Sbjct 1560799 CGACACGGT-GATGAAGGGAACATTGGCTTCACCGGCCGTCGCCTTGGCAAGAAGGGTTT 1560857 Query 16237 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||| ||||| ||| ||| | || | |||||| ||| ||||| || || Sbjct 1560858 TACCGGTACCGGGCGGACCAGTCAGCATAGCACCTTTTGGGATCTTTGCTCC 1560909 >seq1107 Length=3620151 Score = 102 bits (112), Expect = 1e-16 Identities = 174/249 (70%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 176020 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 176079 |||||| ||||| ||||| ||||| |||||||||| ||| || |||||||| || Sbjct 318702 ATCCTTTCCACCAGAAAGACGAGTACCGAACTGACCACTCGGGATCAGCAGATTGATGTT 318761 Query 176080 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACT--TCA 176137 ||| || | ||||| | ||||| |||||||| || |||| | || |||| ||| Sbjct 318762 GTTGCTTCCGACGTAGTTCTGGGCCAAATTGACAATGGTA-CCGC-ACAGGGACTGTTCA 318819 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 176197 || || ||||| || | | || ||||| | | |||| ||| || || |||| |||| Sbjct 318820 CCATGATGGTAGGCGGACATTTCAGCGACTGAACCGGCCAGCTGGGCGACCTTCACCTCA 318879 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 ||| ||| | ||| || | | |||| ||||| || || ||||||||||| Sbjct 318880 CGCTTATCATTACGCTTGAAGCACGTGAACATGACCTTTCGCTGACCGGGCTTGAGACCG 318939 Query 176258 TCCGCCATG 176266 ||| ||||| Sbjct 318940 TCCACCATG 318948 >seq472 Length=3306290 Score = 102 bits (112), Expect = 1e-16 Identities = 174/249 (70%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 176020 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 176079 |||||| ||||| ||||| ||||| |||||||||| ||| || |||||||| || Sbjct 1650500 ATCCTTTCCACCAGAAAGACGAGTACCGAACTGACCACTCGGGATCAGCAGATTGATGTT 1650559 Query 176080 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACT--TCA 176137 ||| || | ||||| | ||||| |||||||| || |||| | || |||| ||| Sbjct 1650560 GTTGCTTCCGACGTAGTTCTGGGCCAAATTGACAATGGTA-CCGC-ACAGGGACTGTTCA 1650617 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 176197 || || ||||| || | | || ||||| | | |||| ||| || || |||| |||| Sbjct 1650618 CCATGATGGTAGGCGGACATTTCAGCGACTGAACCGGCCAGCTGGGCGACCTTCACCTCA 1650677 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 ||| ||| | ||| || | | |||| ||||| || || ||||||||||| Sbjct 1650678 CGCTTATCATTACGCTTGAAGCACGTGAACATGACCTTTCGCTGACCGGGCTTGAGACCG 1650737 Query 176258 TCCGCCATG 176266 ||| ||||| Sbjct 1650738 TCCACCATG 1650746 >seq95 Length=6909593 Score = 102 bits (112), Expect = 1e-16 Identities = 618/980 (63%), Gaps = 23/980 (2%) Strand=Plus/Minus Query 112006 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 112065 ||||||| ||||| ||||| | ||| | | |||||||| || ||| ||| || Sbjct 5343893 TCTATCTCGAGCCGTGGCATGGAGATGTGTTCGAGTTCCTGGATTTGAAAAAGAACACAG 5343834 Query 112066 GTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 112125 | | || || | || | || | |||| ||| || |||||||| ||||| |||| Sbjct 5343833 GCGCGGAAGATGTCCGAGCTAGGGACATGTTCTACGCGCTGTGGATTCCGGATCTGTTCA 5343774 Query 112126 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTC 112185 |||| |||| || | | | | |||| | | || || | | || || Sbjct 5343773 TGAAACGAGTGGAAGCCAACGAAGACTGGTGCTTGATGTGCCCGCATGAATGTCCTGGCT 5343714 Query 112186 TCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTC 112245 | || ||| | ||| || || |||||| | |||||| ||||| | ||| | | Sbjct 5343713 TATCGGATACGTGGGGCGACGAATTTGAAAAATTGTACACATCCTACGAAGCGGAAGGAC 5343654 Query 112246 GGGCGACTGCG-ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACC 112304 || | | || | |||| ||| ||| ||||| || ||| | |||||||| Sbjct 5343653 GGTTCA-TCCGCAAGGTGAAAGCCCAGGATTTGTGGTTTGCGATTATTGAGTCTCAAGTT 5343595 Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 || || || ||||| ||||| ||||||||||| || || | |||||| || ||| | Sbjct 5343594 GAAACCGGAGTTCCATACATGCTCTACAAAGACGCTTGCAATCGAAAGAGCAACCAACAA 5343535 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 ||| | || |||||| |||| ||| | || || || || |||||| | || Sbjct 5343534 AATATCGGCACCATCAAGTGTTCGAACTTGTGCACTGAGATTGTGGAATACTCCTCAAAG 5343475 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484 ||||| | || || || || || || || ||||| | || || ||| | || || Sbjct 5343474 GATGAAATTGCCGTTTGCAATCTGGCGTCTATCGCGTTAAACATGTTCGTGAAACCCGA- 5343416 Query 112485 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTA 112544 ||||||| || | | ||| | | ||||| | ||||||| ||| || || || Sbjct 5343415 --CAAGACATACGACTTCCAGAAATTGAAAGAAGTATCCAAAACTGCCACCAAGAATCTC 5343358 Query 112545 AACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATG 112601 |||| | | || || | ||||| || || || ||| | || || || ||| Sbjct 5343357 AACAAAATCATCGACATCAATTTCTATCCGGTGCCGGAGGCCAAGCG---GTCCAACATG 5343301 Query 112602 AGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGC 112661 | ||||| || ||||| | || ||||| || | || |||| |||||||| || Sbjct 5343300 CGTCACCGCCCGATTGGAATTGGCGTCCAGGGAATGGCCGATGCGTTCATTCTGATGCGT 5343241 Query 112662 CACGCATTTGATTCCGACGAAGC---GAAG-GAAATCAATGCGCGTATATTTGAGACAAT 112717 | | | || ||| ||||| |||| ||| ||| | || || |||||||| Sbjct 5343240 TATCCTTACGACAGCGAAGAAGCCCAGAAGCTAAACCAA----CAGATTTTCGAGACAAT 5343185 Query 112718 GTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAAC 112777 || | | || |||||||| || | || |||| || || || |||| ||||| Sbjct 5343184 CTACTATGGTGCCCTTGAGGCCAGCTGCGAACTGGCGGAAAAAGAAGGCACATACGAAAC 5343125 Query 112778 CTTTGAGGGTTCTCCAG-CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGA 112836 | || |||| || | | || ||||| | || || | ||| |||||| | || Sbjct 5343124 TTATGCTGGTTGCCCGGTCAGCA-AAGGGATTCTACAGTATGACATGTGGAATAAGGAAC 5343066 Query 112837 CCA-AGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 112895 ||| || || | ||||||| |||| | || || ||| | | || |||| Sbjct 5343065 CCACAGATT-TGTGGGACTGGGCCGCTTTAAAAGATAAGATCGCCAAACACGGAGTTCGC 5343007 Query 112896 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 112955 || || | |||| || ||||| || || || ||||||||||| | || || || Sbjct 5343006 AATTCGCTGCTTTTGGCGCCTATGCCGACGGCTTCGACCGCACAAATTCTCGGCAACAAC 5342947 Query 112956 GAATGCTTTGAACCCTACAC 112975 || | ||||||||| ||||| Sbjct 5342946 GAGTCCTTTGAACCGTACAC 5342927 >seq1902 Length=3516739 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185 |||||||| || ||||| |||| ||| | | ||| | | |||| ||||| Sbjct 3490508 AAGAAAGCAGACTGGGCGCTGAACTGGATCTCCAGTAAGCAGGCTAATTTTGGAGAGCGC 3490449 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTA 102244 | |||| ||||| || || || ||||||||| ||| ||| |||| | || | Sbjct 3490448 GTGGTCGCCTTTGCCGCCGTGGAAGGCATCTTCTTCAGCGGTAGCTT-TGCGTCCATATT 3490390 Query 102245 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 102304 ||||||||||||||| || || ||||| || || |||||||||||||| ||||| || Sbjct 3490389 TTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTTACTTTCTCCAACGAGCTGATCTCCCG 3490330 Query 102305 TGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||| || ||| || ||||| Sbjct 3490329 TGACGAGGGCCTACACACGGACTTTGC 3490303 >seq1662 Length=3905379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185 |||||||| || ||||| |||| ||| | | ||| | | |||| ||||| Sbjct 1651564 AAGAAAGCAGACTGGGCGCTGAACTGGATCTCCAGTAAGCAGGCTAATTTTGGAGAGCGC 1651623 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTA 102244 | |||| || || || || || ||||||||| ||| ||| |||| | || | Sbjct 1651624 GTGGTCGCCTTCGCCGCCGTGGAAGGCATCTTCTTCAGCGGTAGCTT-TGCGTCCATATT 1651682 Query 102245 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 102304 ||||||||||||||| || || ||||| || || |||||||||||||| ||||| || Sbjct 1651683 TTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTTACTTTCTCCAACGAGCTGATCTCCCG 1651742 Query 102305 TGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||| || ||| || ||||| Sbjct 1651743 TGACGAGGGCCTACACACGGACTTTGC 1651769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620723506153200