Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq175 109 6e-19 seq1105 104 3e-17 seq95 87.8 2e-12 >seq175 Length=5193165 Score = 109 bits (120), Expect = 6e-19 Identities = 232/341 (68%), Gaps = 9/341 (3%) Strand=Plus/Minus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 ||||| ||| |||| || | ||||| || || | ||||| ||||| || |||||| Sbjct 3013479 AGAATGAACGCATCGGCCATTCCCTGGACGCCAATTCCAATCGGGCGGTGGCGCATGTTG 3013420 Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || ||| || || || || || ||| |||||||| ||||||||||| Sbjct 3013419 GACCGTTTGGCCTCCGGCACCGGATAGAAATTGATGTCGATGATTTTGTTGAGATTCTTG 3013360 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTT--AT 110269 || |||| || | | ||| | ||||| | | | ||| | || || ||| || | Sbjct 3013359 GTGGCAGTTTTGGATACTTCTTTCAGTTTCTGGAAGTCGTATGTCTT-GTCGGGTTTCAC 3013301 Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 |||| ||| | || |||||||| |||||||| || | | | || ||||| || Sbjct 3013300 GAACATGTTT----AACGCGATAGACGCCAGATTGCAAACGGCAATTTCATCTTTTGAGG 3013245 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 |||||||| ||||| || |||| ||| |||| ||| ||| || | ||| | ||| | Sbjct 3013244 AGTATTCCACGATTTCGGTGCACAGGTTCGAACACTTGATGGTGCCGATGTTTTGCTGGT 3013185 Query 110390 T-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGG 110429 | | ||| | |||||| || |||||||| ||||||||||| Sbjct 3013184 TGCTCTTTCG-GTTGCAAGCGTCCTTATATAGCATGTATGG 3013145 >seq1105 Length=3041613 Score = 104 bits (114), Expect = 3e-17 Identities = 297/455 (65%), Gaps = 14/455 (3%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| || || || || | || || | ||| || || || || || || |||||||| Sbjct 1560508 ATCGAACCGTCCCGGACGCAACAGGGCCTTATCCAGGATGTCAACCCGATTGGTAGCGGC 1560567 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 | ||||||| | || | ||| ||||||||||| || ||||||||||| | Sbjct 1560568 CAGAACTACAACGTTCGTTGTAGTGTTAAAACCGTCCATCTCCACCAGAAGCTGGTTCAA 1560627 Query 11625 CGT------CTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTACC 11678 || |||||| | | || | | | ||||| ||||||| ||| Sbjct 1560628 AGTGTTCTCCTGTTCCGAATGACCGCCGAAACTTTTTCCACC------ACGCTTCCGACC 1560681 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 || |||||||| || || ||||| | ||||| || || || ||| | |||| Sbjct 1560682 AACGGCGTCAATTTCGTCAATGAACAATATACAGGGGGCGTGCTTTCGAGCCATTGCGAA 1560741 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 | || |||||||| | |||||||| || |||||||| | ||| | || | || Sbjct 1560742 CATGTCCCGTACACGGGATGGACCAACACCAACAAACATCTCCAAGAACTCTGATCCCGA 1560801 Query 11799 ACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 ||| | |||||||||||||| | ||||| || | || || || || || |||| Sbjct 1560802 -CACGGTGATGAAGGGAACATTGGCTTCACCGGCCGTCGCCTTGGCAAGAAGGGTTTTAC 1560860 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGT 11917 | ||||| || | ||||| || | || || |||||||| || || ||| || Sbjct 1560861 CGGTACCGGGCGGACCAGTCAGCATAGCACCTTTTGGGATCTTTGCTCCCAAGTCAATGT 1560920 Query 11918 AGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 | | | ||| ||||| ||||||| |||| |||| Sbjct 1560921 ACTGTTGAGGATTCTTCAGGAAGTTGACAAACTCC 1560955 >seq95 Length=6909593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 227/341 (67%), Gaps = 9/341 (3%) Strand=Plus/Plus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 ||||| ||| |||| || | ||||| || || | ||||| ||||| || |||||| Sbjct 5343248 AGAATGAACGCATCGGCCATTCCCTGGACGCCAATTCCAATCGGGCGGTGACGCATGTTG 5343307 Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || || || || || || || ||| |||||||| ||||||||||| Sbjct 5343308 GACCGCTTGGCCTCCGGCACCGGATAGAAATTGATGTCGATGATTTTGTTGAGATTCTTG 5343367 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTT--AT 110269 || |||| || | | ||| | | ||| | | | ||| | || || ||| || | Sbjct 5343368 GTGGCAGTTTTGGATACTTCTTTCAATTTCTGGAAGTCGTATGTCTT-GTCGGGTTTCAC 5343426 Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 |||| ||| | || |||||||| |||||||| || | | | || || || || Sbjct 5343427 GAACATGTTT----AACGCGATAGACGCCAGATTGCAAACGGCAATTTCATCCTTTGAGG 5343482 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 |||||||| ||| || || |||||||| |||| ||| ||| || | || | || | Sbjct 5343483 AGTATTCCACAATCTCAGTGCACAAGTTCGAACACTTGATGGTGCCGATATTTTGTTGGT 5343542 Query 110390 T-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGG 110429 | | ||| || ||||| || || || |||||||||||||| Sbjct 5343543 TGCTCTTTCGA-TTGCAAGCGTCTTTGTAGAGCATGTATGG 5343582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588958073043000