Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq95 167 3e-36 seq175 149 7e-31 >seq95 Length=6909593 Score = 167 bits (184), Expect = 3e-36 Identities = 856/1363 (63%), Gaps = 29/1363 (2%) Strand=Plus/Plus Query 47489 CCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACT 47548 ||| ||||| | ||||| || | |||||| | ||||| || ||||| ||||| || Sbjct 5343046 CCAGTCCCACAAATCTGTGGGTTCCTTATTCCACATGTCATACTGTAGAATCCCTTTGCT 5343105 Query 47549 TATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGC 47608 | ||| ||||| ||| |||| || | || | | || || ||||| || || || Sbjct 5343106 GACCGGGCAACCAGCATAAGTTTCGTATGTGCCTTCTTTTTCCGCCAGTTCGCAGCTGGC 5343165 Query 47609 TTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCT-- 47666 || | |||| ||| || ||||| || || || | | |||||| ||| |||||| Sbjct 5343166 CTCAAGGGCACCATAGTAGATTGTCTCGAAAATCTGTTGGTTTAGCTTCTGGGCTTCTTC 5343225 Query 47667 GATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATA 47726 | || || ||||||| || | ||| |||| ||| || || ||||| Sbjct 5343226 GCTG--TCGTAAGGATAACGCATCAGAATGAACGCATCGGCCATTCCCTGGACGCCAATT 5343283 Query 47727 CCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATA 47786 ||||| || | ||| | || || || || || || | ||||| || || Sbjct 5343284 CCAATCGGGCGGTGACGCATGTTGGACCGCTTGGCCTCCGGCACCGGATAGAAATTGATG 5343343 Query 47787 TCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAA 47846 || || ||||| || ||| | |||| | ||||| | || Sbjct 5343344 TCGATGATTTTGTTGAGATTCTTGGTGGCAGTTTTGGATACTTCTTTCAATTTCTGGAAG 5343403 Query 47847 TCAAA---CTTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACA 47903 || | ||||| | | || ||| | || | || ||||| || ||||| || || Sbjct 5343404 TCGTATGTCTTGTCGGGTTTCACGAACATGTTTAACGCGATAGACGCCAGATTGCAAACG 5343463 Query 47904 GCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGA 47961 || | |||| || || ||||| | | || |||| || | || ||| |||| Sbjct 5343464 GCAATTTCATCCTTTGAGGAGTAT--TCCACAATCTCAGTGCACAAGTTCGAACACTTGA 5343521 Query 47962 TAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAG 48021 | || || | |||||| || || | || || ||||| ||||| ||||| | | Sbjct 5343522 TGGTGCCGATATTTTGTTGGTTGCTCTTTCGATTGCAAGCGTCTTTGTAGAGCATGTATG 5343581 Query 48022 GTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTA--- 48078 | ||| ||||| | ||||| ||||| || | ||| | | |||| | |||| Sbjct 5343582 GAACTCCGGTTTCAACTTGAGACTCAATAATCGCAAACCACAAA-TCCTGGGCTTTCACC 5343640 Query 48079 TAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCC 48138 | | | | | | | || | |||||| || || || || |||||||| || | Sbjct 5343641 TTGCGGATGAACCGTCCTT--CCGCTTCGTAGGATGTGTACAATTTTTCAAATTCGTCGC 5343698 Query 48139 CATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCAT 48198 | || || ||| ||||||||||||| || |||||||| |||| || || | Sbjct 5343699 CCCACGTATCCGATAAGCCAGGACATTCATGCGGGCACATCAAGCACCAGTCTTCGTTGG 5343758 Query 48199 TTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTC 48258 || |||| |||| || | ||| || ||||| || || || | ||||||| || Sbjct 5343759 CTTCCACTCGTTTCATGAACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCTAGCTC 5343818 Query 48259 TTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCC 48318 | ||||| ||| | ||| |||| | || || || || | | ||| |||||| Sbjct 5343819 GGACATCTTCCGCGCCTGTGTTCTTTTTCAAATCCAGGAACTCGAACACATCTCCATGCC 5343878 Query 48319 ATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATC 48378 | || || | ||| || || | | |||| || | || || ||||| ||||| | || Sbjct 5343879 ACGGCTCGAGATAGATGGCAAATGCACCAGGCCTCTTGTTGCCTCCCTGATCCACGTACT 5343938 Query 48379 TGGCAGTATTGTTATAAACTCTTAACATTGGGA-CAATACCATTTGATATACCATTGGTT 48437 | || ||||| || || || || ||||| || | |||| || || || || || || ||| Sbjct 5343939 TAGCCGTATTATTGTACACCCTCAACATCGGAATCAAT-CCGTTGGAGATGCCGTTAGTT 5343997 Query 48438 CCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTG 48495 || | ||| || |||| | |||| || | | | ||| || ||| ||||| || | Sbjct 5343998 CCGGCAATGTAGGTTCCTTTGGCTCGGATGCAGTGCACATTCAA--ACCAATACCGCCGG 5344055 Query 48496 CCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCAT 48555 | ||| || || | |||||| |||| | ||||| || || || || || ||||| | Sbjct 5344056 CGGATTTGGAAATCAACGCACACTGTTTCAACGTATCGTAGATGCCCTCAATGCTATCGT 5344115 Query 48556 CTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATA 48615 | |||| | || || || || || | || || ||| ||| | | ||| | Sbjct 5344116 CGCTCATGGTCAACAGGAAGCAGGACGATAACTGTGGCCTACACGTTGCGGCCGCAAACA 5344175 Query 48616 ATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAG 48675 || || || || ||| | || || |||| || | ||| |||||||| ||||| | | Sbjct 5344176 TGGTAGGCGAAGCGTGAGTGAAGTATCTCTCCGACAGCAAGTTATATGTCTCAATGGCCG 5344235 Query 48676 AATCTAT---ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTC 48732 || || |||| ||| ||||| || | || ||||| ||||| | || || | Sbjct 5344236 CGTCGATGTCTTCCCCGTGA---ATACCGATGGCCACGCGCATCAACATGTGCTGGGGAC 5344292 Query 48733 TTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAA 48792 ||| || || || || || || | | ||| || | ||||| ||||| || || | Sbjct 5344293 GTTCCACGATCTTACCCTTGATCTTAAGCAAATAGGACCTCTCCAACGTTTTGAAGCCGA 5344352 Query 48793 AATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 | |||||||| |||||| ||| | ||| || | ||||| Sbjct 5344353 AGTAGTTGTAGCCAAAGTCCCGATCGTAAATGATGGCCGAATT 5344395 >seq175 Length=5193165 Score = 149 bits (164), Expect = 7e-31 Identities = 468/719 (65%), Gaps = 12/719 (2%) Strand=Plus/Minus Query 48123 TTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAAT 48182 || ||||| || || || || || | ||| ||||||||||| | || |||||||| Sbjct 3013044 TTTTCAAACTCGTCGCCCCACGTATCAGATAATCCAGGACATTCGTGCGGGCACATCAAG 3012985 Query 48183 GACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA 48242 |||| || || | || |||| |||| || | ||| || ||||| || || Sbjct 3012984 CACCAGTCTTCGTTGGCTTCCACTCGTTTCATGAACAGATCCGGAATCCACAGCGCGTAG 3012925 Query 48243 AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCC 48302 || | ||||||| || | ||||| ||| | ||| |||| | || || || || Sbjct 3012924 AACATGTCCCTAGCTCGGACATCTTCCGCGCCTGTGTTCTTTTTCAAATCCAGGAACTCG 3012865 Query 48303 ATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCT 48362 | | ||| ||||||| || || | ||| || || | | |||| || | || || ||| Sbjct 3012864 AACACATCTCCATGCCACGGCTCCAGATAGATGGCAAATGCACCAGGCCTCTTGTTGCCT 3012805 Query 48363 CCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA-CAATACCATT 48421 || ||||| | || |||| ||||| || || || || ||||| || | |||| || || Sbjct 3012804 CCCTGATCCACGTACTTGGCCGTATTATTGTACACCCTCAACATCGGAATCAAT-CCGTT 3012746 Query 48422 TGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAA 48479 || || || ||||| || | ||| || |||| | |||| || | | | ||| || Sbjct 3012745 GGAGATGCCGTTGGTCCCAGCAATGTAGGTTCCCTTCGCTCGGATGCAGTGCACATTCAA 3012686 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 ||| ||||| || || ||| || || | |||||| |||| | ||||| || || Sbjct 3012685 --ACCAATACCGCCGGCGGATTTGGAAATCAACGCACACTGTTTCAACGTATCGTAGATA 3012628 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAA 48599 || || || ||||| || |||| | || || || || || | || || ||| Sbjct 3012627 CCCTCAATGCTATCGTCGCTCATGGTCAACAGGAAGCAGGACGATAACTGAGGCCTACAC 3012568 Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||| | | ||| | || || || || || | || || |||| || | ||| ||| Sbjct 3012567 GTTGCGGCCGCAAACATGGTAGGCGAAGCGTGGGTGAAGTATCTCTCCGACAGCAAGTTA 3012508 Query 48660 TATGTTTCAATAACAGAATCTAT---ATCCCATTGATGTATACCTATAGATACACGCATT 48716 ||||| ||||| | | || || |||| ||| ||||| || | || ||||| Sbjct 3012507 TATGTCTCAATGGCCGCGTCGATGTCTTCCCCGTGA---ATACCGATGGCCACGCGCATC 3012451 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 ||||| | || || | ||| || || || || || || | ||||| || ||| Sbjct 3012450 AACATGTGCTGGGGACGTTCCACGATCTTACCCTTGATCTTAAGCAGATAGGACCGCTCC 3012391 Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 || ||||| || || || |||||||| |||||| ||| | ||| || | ||||| Sbjct 3012390 AACGTTTTGAAGCCGAAGTAGTTGTAGCCAAAGTCCCGATCGTAAATGATGGCCGAATT 3012332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562091690813400