Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq432 96.9 4e-15 seq472 95.1 1e-14 seq1107 91.5 2e-13 >seq432 Length=3773907 Score = 96.9 bits (106), Expect = 4e-15 Identities = 268/409 (66%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 177559 TCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCT 177618 ||||| || | ||| || ||||| ||| ||||| || | || || || | | || Sbjct 619945 TCAACGAATTCCCTTACCGAGTGACACTCGCCCGTAGCAATCACGTAATCCTGCGGTTCC 620004 Query 177619 TCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTG 177678 || || ||||| | |||||| || || || ||||||| || ||||||||||||| Sbjct 620005 GGCTGCTGTAGCATCATCCACATAGCCTCCACGTAGTCCTGTGCGTGACCCCAGTCTCGC 620064 Query 177679 GCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTGACG 177738 | || || || || || || | | | || | | | | ||||| | | | Sbjct 620065 TTGGAGTCCAGATTTCCCAGCTCCAAGCATTCCATTTGATTGAGCGAAATTT--TCGCCA 620122 Query 177739 CCATCAG--TAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGA 177796 || | | ||| ||| | || || |||| | ||||| | || || |||||||||| Sbjct 620123 CCGACCGGGTAACTTTCCTCGTCACGAAGTTCTCGCCTCGCCGGGGCGACTCGTGGTTGA 620182 Query 177797 AGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGT 177856 | ||||| || ||||||| |||| || || | ||| || || || | || | ||||| Sbjct 620183 ACAGGATCCCATTGCAGGCAAACATCCCGTATGCTTCCCGATAGTTGATCACAATCCAGT 620242 Query 177857 GAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTT 177916 || || |||| | | |||| ||||| || ||||| ||||||| |||| | | Sbjct 620243 AGCCGTACATCTTGGCGCAGGCATACGGAGATCGCGGATAGAACGGTGTCTTCTCATTCT 620302 Query 177917 GTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 |||| ||||| ||| || || ||| ||||| || ||| ||||| Sbjct 620303 GTGGCGTTTCCACGACCTTTCCGTACAGTTCCGATGTACTGGCCTGGTA 620351 >seq472 Length=3306290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 284/431 (66%), Gaps = 8/431 (2%) Strand=Plus/Minus Query 14357 ATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAAT 14416 |||| ||| ||||||||||| ||| | || || |||| | |||||| | ||| Sbjct 1650745 ATGGTGGACGGTCTCAAGCCCGGTCAGCGAAAGGTCATGTTCACGTGCTTCAAGCGTAAT 1650686 Query 14417 CTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTAC 14476 ||| ||| ||||||| || || ||||| | | ||||| || | ||| || ||| Sbjct 1650685 GATAAGCGTGAGGTGAAGGTCGCCCAGCTGGCCGGTTCAGTCGCTGAAATGTCCGCCTAC 1650626 Query 14477 CACCATGGTGAAGTAT-CCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGG 14535 || ||||||||| | ||| |||| || ||||| || ||||| | ||||| || Sbjct 1650625 CATCATGGTGAACAGTCCCTGTGCGG-TACCATTGTCAATTTGGCCCAGAACTACGTCGG 1650567 Query 14536 TTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGG 14595 |||||||| || || || ||| ||||||| || ||||| ||||| ||||| Sbjct 1650566 AAGCAACAACATCAATCTGCTGATCCCGAGTGGTCAGTTCGGTACTCGTCTTTCTGGTGG 1650507 Query 14596 TAAGGATGCTTCTCAG-ACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGA 14654 |||||| | ||| | | ||||| ||||| | || || | | |||| || Sbjct 1650506 AAAGGATAGCGC-CAGTCCTCGTTACATCTTCACCATGCTGTCCCCGTTGACTCGGTTGA 1650448 Query 14655 TCTTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTG 14714 |||| | || |||||| || | || | ||| | ||| || | || | Sbjct 1650447 TCTTCCACCCATTGGATGATCCTCTGCTGGAATACCAGTTCGAGGACAACCAGAAGATCG 1650388 Query 14715 AACCAGACTTT--TACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTAT 14772 |||| ||||| || |||||| | |||||||| | || || ||||| || ||||| Sbjct 1650387 AACC--ACTTTGGTATCTGCCAATCATTCCAATGGTATTGGTCAACGGAACGGAAGGTAT 1650330 Query 14773 CGGTACGGGTT 14783 ||||||||||| Sbjct 1650329 CGGTACGGGTT 1650319 >seq1107 Length=3620151 Score = 91.5 bits (100), Expect = 2e-13 Identities = 283/431 (66%), Gaps = 8/431 (2%) Strand=Plus/Minus Query 14357 ATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAAT 14416 |||| ||| ||||||||||| ||| | || || |||| | |||||| | ||| Sbjct 318947 ATGGTGGACGGTCTCAAGCCCGGTCAGCGAAAGGTCATGTTCACGTGCTTCAAGCGTAAT 318888 Query 14417 CTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTAC 14476 ||| ||| ||||||| || || ||||| | | ||||| || | ||| || ||| Sbjct 318887 GATAAGCGTGAGGTGAAGGTCGCCCAGCTGGCCGGTTCAGTCGCTGAAATGTCCGCCTAC 318828 Query 14477 CACCATGGTGAAGTAT-CCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGG 14535 || ||||||||| | ||| |||| || ||||| || ||||| | ||||| || Sbjct 318827 CATCATGGTGAACAGTCCCTGTGCGG-TACCATTGTCAATTTGGCCCAGAACTACGTCGG 318769 Query 14536 TTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGG 14595 |||||||| || || || ||| ||||||| || ||||| ||||| ||||| Sbjct 318768 AAGCAACAACATCAATCTGCTGATCCCGAGTGGTCAGTTCGGTACTCGTCTTTCTGGTGG 318709 Query 14596 TAAGGATGCTTCTCAG-ACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGA 14654 |||||| | ||| | | ||||| ||||| | || || | | |||| || Sbjct 318708 AAAGGATAGCGC-CAGTCCTCGTTACATCTTCACCATGCTGTCCCCGTTGACTCGGTTGA 318650 Query 14655 TCTTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTG 14714 |||| | || |||||| || | || | ||| | ||| || | || | Sbjct 318649 TCTTCCACCCATTGGATGATCCTCTGCTGGAATACCAGTTCGAGGACAACCAGAAGATCG 318590 Query 14715 AACCAGACTTT--TACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTAT 14772 |||| ||||| || |||||| | |||||||| | || || || || || ||||| Sbjct 318589 AACC--ACTTTGGTATCTGCCAATCATTCCAATGGTGTTGGTCAACGGCACGGAAGGTAT 318532 Query 14773 CGGTACGGGTT 14783 ||||||||||| Sbjct 318531 CGGTACGGGTT 318521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596551441912800