Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1105 87.8 5e-12 seq175 86.0 2e-11 seq95 86.0 2e-11 >seq1105 Length=3041613 Score = 87.8 bits (96), Expect = 5e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||| || ||||||||||||||||| | | ||| || | | | || || ||||| Sbjct 1560679 ACCAACGGCGTCAATTTCGTCAATGAACAATATACAGGGGGCGTGCTTTCGAGCCATTGC 1560738 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || | || | ||||||||||| |||| ||||||| |||| || | || || || | Sbjct 1560739 GAACATGTCCCGTACACGGGATGGACCAACACCAACAAACATCTCCAAGAACTCTGATCC 1560798 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || || ||||| | ||||| ||||| || || ||| | || ||||| || || Sbjct 1560799 CGACACGGTGATGAAGGGAACATTGGCTTCACCGGCCGTCGCCTTGGCAAGAAGGGTTTT 1560858 Query 289209 ACCTGTTCCAGGTGGTCC 289226 ||| || || || || || Sbjct 1560859 ACCGGTACCGGGCGGACC 1560876 >seq175 Length=5193165 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAG 155648 |||||||||||||| || || ||| | || | | | |||||| || || || | Sbjct 3013284 ATAGACGCCAGATTGCAAACGGCAATTTCATCTTTTGAGGAGTATTCCACGATTTCGGTG 3013225 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 |||||||| |||| |||||||||||| | || | |||||| || | ||| ||||| Sbjct 3013224 CACAGGTTCGAACACTTGATGGTGCCGATGTTTTGCTGGTTGCTCTTTCGGTTGCAAGCG 3013165 Query 155709 TCCTTGTATAGAATGTATGG 155728 ||||| ||||| |||||||| Sbjct 3013164 TCCTTATATAGCATGTATGG 3013145 >seq95 Length=6909593 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAG 155648 |||||||||||||| || || ||| | || | | | |||||| ||||||||| | Sbjct 5343443 ATAGACGCCAGATTGCAAACGGCAATTTCATCCTTTGAGGAGTATTCCACAATCTCAGTG 5343502 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 |||| ||| |||| |||||||||||| | ||| | ||||| || | || ||||| Sbjct 5343503 CACAAGTTCGAACACTTGATGGTGCCGATATTTTGTTGGTTGCTCTTTCGATTGCAAGCG 5343562 Query 155709 TCCTTGTATAGAATGTATGG 155728 || ||||| || |||||||| Sbjct 5343563 TCTTTGTAGAGCATGTATGG 5343582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471771681590595