Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1930 96.9 2e-15 seq477 84.2 2e-11 seq121 82.4 5e-11 >seq1930 Length=1715699 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || ||||||||||| ||| || || | || |||||| | | Sbjct 813986 ATGCAGATCTTCGTCAAGACTCTTACTGGCAAAACCATCACCTTGGAGGTCGAACCCTCG 814045 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || ||||| || || || || |||||| | || || ||| Sbjct 814046 GATACTATTGAAAACGTCAAGGCCAAGATTCAGGATAAGGAAGGTATCCCTCCAGACCAG 814105 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || || || |||||||| || ||||| || | |||| | |||| || |||||| Sbjct 814106 CAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTGTCGGACTACAAC 814165 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || || || |||||||| |||||||||| ||||| | ||||| ||| Sbjct 814166 ATTCAGAAGGAGAGCACACTGCATTTGGTCCTGCGTCTCCGTGGAGGC 814213 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| |||| || ||||| || || || || ||||| || || |||| Sbjct 812255 GATAAGGAAGGTATTCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 812314 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| |||||| || ||||||||||| || |||||||| | ||| ||||| || Sbjct 812315 GATGGCCGCACCTTGTCGGACTACAACATCCAGAAGGAGAGCACCCTTCATCTGGTTCTG 812374 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 812375 CGTCTGCGTGGAGG 812388 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| |||||||| || || || ||||| || || |||| || | ||| | | |||| || Sbjct 811591 GGATCAGCAACGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACCCTGTCGGA 811650 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||||| || | ||||||||| ||||| ||||||| || Sbjct 811651 CTACAACATCCAGAAGGAGAGTACCCTCCATTTGGTTCTGCGTCTGCGTGGAGG 811704 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| | || || ||||| || || ||||| ||||| || || |||| Sbjct 812483 GATAAGGAAGGTATCCCTCCAGATCAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAA 812542 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| |||||| || |||||||||||||| ||||| || | ||| | ||| || Sbjct 812543 GATGGCCGCACCTTGTCGGACTACAACATCCAAAAGGAGAGTACCCTTCATCTAGTTCTG 812602 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 812603 CGTCTGCGTGGAGG 812616 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || || || ||||| || || |||| || | |||| | |||| || Sbjct 812048 GATCAGCAACGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGAC 812107 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || |||||||| | ||| ||||| ||||| | ||||| || Sbjct 812108 TACAACATCCAGAAGGAGAGCACCCTTCATCTGGTTCTGCGTCTCCGTGGAGG 812160 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || || || || || ||||| || | |||| | |||| || Sbjct 813644 GATCAGCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACCCTGTCGGAC 813703 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||||| ||| | ||| |||| ||||| |||||||||| Sbjct 813704 TACAACATCCAGAAGGAGAGTACTCTTCATCTGGTGCTGCGTCTGCGTGGCGG 813756 >seq477 Length=2976132 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| | || || ||||| || || || || ||||| || || ||||| Sbjct 2303521 GATAAGGAAGGTATCCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAA 2303462 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | | || || ||||||||||| || || |||||| | ||||||||| || Sbjct 2303461 GATGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAAAGCACTCTTCATTTGGTTCTG 2303402 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 2303401 CGTCTTCGTGGAGG 2303388 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| | || || || || || | || || |||||||| || |||| Sbjct 2303749 GATAAGGAAGGTATCCCTCCAGATCAACAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAA 2303690 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| |||||| || ||||||||||| || || |||||| | ||| ||||| || Sbjct 2303689 GATGGACGCACCTTGTCAGACTACAACATCCAGAAGGAAAGCACTCTTCATCTGGTTCTG 2303630 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 2303629 CGTCTTCGTGGAGG 2303616 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| | || || ||||| || || || || ||||| || || |||| Sbjct 2304889 GATAAGGAAGGTATCCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAA 2304830 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | |||| || ||||||||||| || ||||||||| | ||| |||| || Sbjct 2304829 GATGGCCGCACCCTGTCGGACTACAACATCCAGAAGGAGAGCACTCTTCATCTGGTCCTG 2304770 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 2304769 CGTCTGCGTGGAGG 2304756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| |||||||| || || |||||||| || || |||| || | ||| | | |||| || Sbjct 2306237 GGATCAGCAACGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGTACCCTGTCGGA 2306178 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||||| || | ||| |||| ||||| ||||||| || Sbjct 2306177 CTACAACATCCAGAAGGAGAGTACCCTTCATCTGGTCCTGCGTCTGCGTGGAGG 2306124 >seq121 Length=2024968 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || || || || || || || || |||| |||||| || Sbjct 1447378 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAACCGTCC 1447319 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| |||||| ||||| || || || || | ||| || | Sbjct 1447318 GATACGATCGAGAAT--GTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCGCCAGATC 1447261 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || || ||||| || || |||| || | |||| | ||||||| |||| Sbjct 1447260 AGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 1447201 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||| || ||| |||| |||| ||||| |||| | ||||| |||| Sbjct 1447200 ACATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTCCGTGGTGGCG 1447150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355851839227245