Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq44 228 8e-55 >seq44 Length=686090 Score = 228 bits (252), Expect = 8e-55 Identities = 570/860 (66%), Gaps = 8/860 (1%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCT--AGAGATATATTCTCCATGAAATCAAAAGGAT 16751 ||||| || ||||| ||||| || ||| |||||| |||| || |||||||||||||||| Sbjct 254516 TTTTCAAAGAAGTTTGTTTTTCCATCTGTAGAGAT-TATTGTC-ATGAAATCAAAAGGAT 254573 Query 16752 TAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 | | | | | || || |||||| ||| | | ||||||||| || ||||| | Sbjct 254574 TTACAACATTATAAATCTTCTCACACCCCAATTCTGTCAATAATCTATCAGCCACAAACT 254633 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871 | |||||||| |||||||||| || ||||| || || | || || || | ||| || | Sbjct 254634 CAATATATTGACACATTAATTTACAATTCATGCCAATTAAACTCACTGGTAAAGCATCAG 254693 Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGG 16931 | | ||| ||| || || | || || || ||| ||||| | |||| ||||| | Sbjct 254694 TGAGGAATTCTTGTTCAATGATTACAGCATCGCGAATTATACTTGTCACTCTTTCCTTTG 254753 Query 16932 ACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGT 16991 | ||| | ||| ||| | ||||| | ||| || ||||| || |||| || || | Sbjct 254754 AAGGTTTTTGTACAAGGTAGGAGAACATTAAACAAGCAAAATCACAGTGTAGACCTTCAT 254813 Query 16992 CTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACC 17051 | || || | || || ||||| || || || ||||| || | || || | || Sbjct 254814 CCCTTGAAATTAACTCATTTGAAAAGGTTAAGCCAGGCATAAGACCCCTCTTTTTGAGCC 254873 Query 17052 AAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTA 17111 | || || || || || ||||||||||| || ||||| || | ||||| || | | Sbjct 254874 AGAAAATTGCTGCAAAACTGCCAGAAAAGAAAATGCCCTCAACAGCAGCAAAAGCTACAA 254933 Query 17112 ATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTT 17171 || || | | | || | ||| | | ||||| ||| |||| || || || | Sbjct 254934 TTCTCTCACCAAAACTGGCATTCTTGCTGCTGATCCAGTTCAATGCCCATTCAGCCTTCT 254993 Query 17172 GCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTC 17229 || | ||| | ||||| ||||| || ||| || | ||||||| | | || Sbjct 254994 TTTTAACACAAGGTAATGTTTCAATGGCATTGAAAAGAAAT--TCTTTTTGATCCGGATC 255051 Query 17230 GATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTAT 17289 | || || || || || || | |||||||||||| ||||| || ||||| ||||| || Sbjct 255052 ACTGATGTAAGTTTCAATTAGCATGCTGTACATTTCAGAGTGGATATTCTCAATGGCAAT 255111 Query 17290 CTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGC 17349 |||||||| |||||||| | ||||| | | || ||||| | ||| |||||| | Sbjct 255112 TTGAAATCCATAAAAGCACCTAGCTTCAGTGACCTGCACTTCTTGGCTGAACCGTTCCAC 255171 Query 17350 TAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 || || |||||||| || || || ||||| || || || | | || ||||| Sbjct 255172 TAAGTTCTCGTTCACAATACCATCAGAGGCGGCAAAGAAAGCAAGGACGTGGGAGATGAA 255231 Query 17410 ATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTC 17469 | |||| | ||| || | ||| | | | ||| ||||| | |||||||| Sbjct 255232 GTGCCTTTCATTGTCTGTTAGCTTGACCCAATGATCCAGATCCTTGGACAAGTCCACTTC 255291 Query 17470 TTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTG 17529 ||| | |||||||| || |||| | || || | ||||||||| |||||| Sbjct 255292 TTCTGTTGTCCAAAATGAGGCTTCTGCTTCCTTGTATTTGGCCCAAATATCTGGGTATTG 255351 Query 17530 TATGGGGAATACAACATATC 17549 |||||||| | |||| ||| Sbjct 255352 AATGGGGAAAATAACAAATC 255371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517525784472840