Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq44 268 9e-67 >seq44 Length=686090 Score = 268 bits (296), Expect = 9e-67 Identities = 570/848 (67%), Gaps = 6/848 (1%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 ||||| |||||||| |||||||| ||| ||| || || ||| |||||||| ||||| Sbjct 254516 TTTTCAAAGAAGTTTGTTTTTCCATCTGTAGAGATTATTGTCATGAAATCAAAAGGATTT 254575 Query 15992 GTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCT 16051 | | | | ||||| |||||| ||| || | ||||||||| || ||||| || Sbjct 254576 ACAACATTATAAATCTTCTCACACCCCAATTCTGTCAATAATCTATCAGCCACAAACTCA 254635 Query 16052 ATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTT 16111 ||||||||||||||||| | ||||| || || || | | || || | ||| | || Sbjct 254636 ATATATTGACACATTAATTTACAATTCATGCCAATTAAACTCACTGGTAAAGCATCAGTG 254695 Query 16112 AAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGAC 16171 | |||| |||||| || | || || || ||| ||| || ||| | | || Sbjct 254696 AGGAATTCTTGTTCAATGATTACAGCATCGCGAATTATACTTGTCACTCTTTCCTTTGAA 254755 Query 16172 GGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCT 16231 ||| | || |||| ||||||| ||| || || || || ||||| ||||| || Sbjct 254756 GGTTTTTGTACAAGGTAGGAGAACATTAAACAAGCAAAATCACAGTGTAGACCTTCATCC 254815 Query 16232 CTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAG 16291 || || | || || ||||| ||||| || ||||| || | || || | |||| Sbjct 254816 CTTGAAATTAACTCATTTGAAAAGGTTAAGCCAGGCATAAGACCCCTCTTTTTGAGCCAG 254875 Query 16292 AATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAAT 16351 || || || ||||| || |||||||| || |||||||||| |||||||| | | | Sbjct 254876 AAAATTGCTGCAAAACTGCCAGAAAAGAAAATGCCCTCAACAGCAGCAAAAGCTACAATT 254935 Query 16352 CGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGT 16411 | || | | | |||| || | | ||||| ||| | ||||||| || || | | Sbjct 254936 CTCTCACCAAAACTGGCATTCTTGCTGCTGATCCAGTTCAATGCCCATTCAGCCTTCTTT 254995 Query 16412 TTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTT-TCCTGAATATCG 16468 || | |||| | ||||| ||||| || ||| || |||| ||| ||| || || Sbjct 254996 TTAACACAAGGTAATGTTTCAATGGCATTGAAAAGAAATTCTTTTTGATCCGGA---TCA 255052 Query 16469 ATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATC 16528 | || || || ||||| || | ||||||||||| ||||| || ||||| ||||| || Sbjct 255053 CTGATGTAAGTTTCAATTAGCATGCTGTACATTTCAGAGTGGATATTCTCAATGGCAATT 255112 Query 16529 TGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 ||||||||||| ||||| | ||| || | | || ||||| | || |||||| | Sbjct 255113 TGAAATCCATAAAAGCACCTAGCTTCAGTGACCTGCACTTCTTGGCTGAACCGTTCCACT 255172 Query 16589 AGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAA 16648 | |||||| ||||| ||||| ||| || ||||| || || | | ||| ||||| Sbjct 255173 AAGTTCTCGTTCACAATACCATCAGAGGCGGCAAAGAAAGCAAGGACGTGGGAGATGAAG 255232 Query 16649 TATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCT 16708 | |||| | ||| || | ||||| | | ||| ||||| | ||||||||| Sbjct 255233 TGCCTTTCATTGTCTGTTAGCTTGACCCAATGATCCAGATCCTTGGACAAGTCCACTTCT 255292 Query 16709 TCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGT 16768 |||| |||||||| || |||| | || || | ||||||||| |||||| Sbjct 255293 TCTGTTGTCCAAAATGAGGCTTCTGCTTCCTTGTATTTGGCCCAAATATCTGGGTATTGA 255352 Query 16769 ATGGGAAA 16776 ||||| || Sbjct 255353 ATGGGGAA 255360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511394819221160