Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq44 324 1e-83 >seq44 Length=686090 Score = 324 bits (358), Expect = 1e-83 Identities = 603/883 (68%), Gaps = 18/883 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 ||||||||||| |||| |||||| || | || || | | || ||| | || Sbjct 254442 TTTAAAAATCAGCATCTGTAGAAAATACTGTGTCATTGTCA------ATCACTCCAACTT 254495 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||| | |||| ||||||||||||| ||||||||||| ||| || || || Sbjct 254496 TTTGATATTCTCCAACTTTCTTTTCAAAGAAGTTTGTTTTTCCATCTGTAGAGATTATTG 254555 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTAT-----TTATCGCATCCCAATTCCAA 16059 ||| ||||||||||||||| |||| | ||| || || || |||||||| Sbjct 254556 TCATGAAATCAAAAGGATTT-----ACAACATTATAAATCTTCTCACACCCCAATTCTGT 254610 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 |||||||||||| |||||||| || ||||| || |||||| | ||| ||||| || || Sbjct 254611 CAATAATCTATCAGCCACAAACTCAATATATTGACACATTAATTTACAATTCATGCCAAT 254670 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| | || || | || || || | || | || ||| || | || || || || Sbjct 254671 TAAACTCACTGGTAAAGCATCAGTGAGGAATTCTTGTTCAATGATTACAGCATCGCGAAT 254730 Query 16180 TATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGC 16239 |||| | | ||| ||| | || | || | || ||||||| |||||| Sbjct 254731 TATACTTGTCACTCTTTCCTTTGAAGGTTTTTGTACAAGGTAGGAGAACATTAAACAAGC 254790 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||||||||| || | ||||| ||||| |||||||| |||||||| || | || || Sbjct 254791 AAAATCACAGTGTAGACCTTCATCCCTTGAAATTAACTCATTTGAAAAGGTTAAGCCAGG 254850 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| || || | ||||| | ||| || || || ||||| ||||||||||| || || Sbjct 254851 CATAAGACCCCTCTTTTTGAGCCAGAAAATTGCTGCAAAACTGCCAGAAAAGAAAATGCC 254910 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcca 16419 ||||| || ||||| || || | || |||||| | | ||| || || ||||| Sbjct 254911 CTCAACAGCAGCAAAAGCTACAATTCTCTCACCAAAACTGGCATTCTTGCTGCTGATCCA 254970 Query 16420 ttttttagcccaatttgctttttgtttAACAC-AGTTCATGTTCTCTATTGCATTAAATA 16478 || ||||| | || || | |||||||| || | ||||| || || ||||| || | Sbjct 254971 GTTCAATGCCCATTCAGCCTTCTTTTTAACACAAGGTAATGTT-TCAATGGCATTGAAAA 255029 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | ||||| | ||| || ||||| || ||||| | || |||||||| | Sbjct 255030 GAAATTCTTTTTGATCCGGATCACTGATGTAAGTTTCAATTAGCATGCTGTACATTTCAG 255089 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 | || |||||||| || || || ||||| ||||||||||| |||||||| | | || | Sbjct 255090 AGTGGATATTCTCAATGGCAATTTGAAATCCATAAAAGCACCTAGCTTCAGTGACCTGCA 255149 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 |||| | |||| ||| ||||||| ||||| || || ||||| || ||||| | Sbjct 255150 CTTCTTGGCTGAACCGTTCCACTAAGTTCTCGTTCACAATACCATCAGAGGCGGCAAAGA 255209 Query 16659 ACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAA 16718 | ||||| | ||| || || | |||| || |||| || || | ||| | | | Sbjct 255210 AAGCAAGGACGTGGGAGATGAAGTGCCTTTCATTGTCTGTTAGCTTGACCCAATGATCCA 255269 Query 16719 AATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 ||| || || || || || |||||| |||||||| || || Sbjct 255270 GATCCTTGGACAAGTCCACTTCTTCTGTTGTCCAAAATGAGGC 255312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462494291571800