Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq153 98.7 8e-16 seq5 89.7 4e-13 >seq153 Length=365504 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||||||| || ||| ||||||||| |||||||||||| | Sbjct 156776 CCACCTCTGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 156835 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | || | || |||| ||||| |||||||| |||| || || ||||| || || Sbjct 156836 AATGTACGTCCATCCTCCAACTGTTTACCGGCGAAGATCAGACGTTGCTGGTCTGGTGGA 156895 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| ||||| || || | | | |||| ||| ||| Sbjct 156896 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCGACC 156955 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || |||||||| ||||| || ||||| || |||||||| Sbjct 156956 TCAAGAGTGATGGTCTTGCCAGTCAGCGTTTTCACGAAAATTTGCAT 157002 >seq5 Length=1768869 Score = 89.7 bits (98), Expect = 4e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTT 45168 || ||||||||||| | ||||||||| || ||| ||||| ||||| || || || | | Sbjct 909880 CCTCCTCTCAATCTAAGTACCAAGTGAAGAGTGGATTCCTTTTGAATATTATAATCAGAT 909939 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | ||| | || || |||||||| ||||| || || | || |||||||| ||||| Sbjct 909940 AAGGT-GCGTCCATCTTCTAGTTGTTTGCCGGCAAAGATAAGACGTTGTTGGTCTGGAGG 909998 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261 | ||| ||||| ||| ||||| |||||| Sbjct 909999 GATACCTTCCTTATCCTGTATTTTAGCCTTAAC 910031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395060451719323