Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq44 306 4e-78 >seq44 Length=686090 Score = 306 bits (338), Expect = 4e-78 Identities = 604/880 (69%), Gaps = 28/880 (3%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| ||||| ||||| || | ||| |||| | || || || | |||| Sbjct 254444 TAAAAATCAGCATCTGTAGAAAATACTGT---GTCATTGTCA---ATCACTCCAACTTTT 254497 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC--AGTGATATATTTT 13973 |||||||| | |||| | |||||||||||||| ||||| || || || ||| |||| | Sbjct 254498 TGATATTCTCCAACTTTCTTTTCAAAGAAGTTTGTTTTTCCATCTGTAGAGAT-TATTGT 254556 Query 13974 CCATAAAATCAAATGGATTTGTTGACATAAACACT-TTATCACAACCTAGTTCTAATAGT 14032 | || |||||||| |||||| |||| | | | || ||||| || | |||| | | Sbjct 254557 C-ATGAAATCAAAAGGATTTACA-ACATTATAAATCTTCTCACACCCCAATTCTGTCAAT 254614 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 |||||||| || | ||||||||||||||| ||||||| | ||||||||| || |||| Sbjct 254615 AATCTATCAGCCACAAACTCAATATATTGACACATTAATTTACAATTCATGCCAATTAAA 254674 Query 14093 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 14152 | || || | || || | ||||||| ||| || ||||| ||| || ||| Sbjct 254675 CTCACTGGTAAAGCATCAGTGAGGAATTCTTGTTCAATGATTACAGCATCGCGAATTATA 254734 Query 14153 ATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTA---AAAATTAAACACGCA 14209 | || | |||| || ||||| | || || | | | || |||||||| ||| Sbjct 254735 CTTGTCACTCTTTCCTTTGAAGGT---TTTTGTACAAGGTAGGAGAACATTAAACAAGCA 254791 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 |||||||| || || || ||||| || ||| | || |||||||| ||||| || ||| Sbjct 254792 AAATCACAGTGTAGACCTTCATCCCTTGAAATTAACTCATTTGAAAAGGTTAAGCCAGGC 254851 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329 || | || | ||||| | ||| || ||||| || || || |||||||| || ||| Sbjct 254852 ATAAGACCCCTCTTTTTGAGCCAGAAAATTGCTGCAAAACTGCCAGAAAAGAAAATGCCC 254911 Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14389 ||||| |||||||| |||| | || || ||||| || || ||| | ||||| Sbjct 254912 TCAACAGCAGCAAAAGCTACAATTCTCTCACCAAAACTGGCATTCTTGCTGCTGATCCAG 254971 Query 14390 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 || |||||||||| || ||||||| | || | ||||||||| ||||| || | | Sbjct 254972 TTCAATGCCCATTCAGCCTTCTTTTTAACACAAGGTAATGTTTCAATGGCATTGAAAAGA 255031 Query 14450 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14509 ||| || | | | | ||||| || ||||| || | ||| |||||||||||| Sbjct 255032 AATTCTTTTTGATCCGGATCACTGATGTAAGTTTCAATTAGCATGCTGTACATTTCAGAG 255091 Query 14510 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTGTA 14567 || || || || || || || ||||| |||||||| || |||||||| ||||| || | Sbjct 255092 TGGATATTCTCAATGGCAATTTGAAATCCATAAAAGCACCTAGCTTCAGTGACC--TGCA 255149 Query 14568 CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14627 | ||| | || | ||| | || || || || || ||||||||| || ||||| | Sbjct 255150 CTTCTTGGCTGAACCGTTCCACTAAGTTCTCGTTCACAATACCATCAGAGGCGGCAAAGA 255209 Query 14628 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG-CTG--AGTTTTTTCCAATCGG 14684 | || | | || || ||| ||| ||||||| ||| || || ||||| Sbjct 255210 AAGCAAGGACGTGGGAGATGAAG---TGCCTTTCATTGTCTGTTAGCTTGACCCAATGAT 255266 Query 14685 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 | | |||||| || | || ||||| || ||||||||| Sbjct 255267 CCAGATCCTTGGACAAGTCCACTTCTTCTGTTGTCCAAAA 255306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482327132192840