Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq44 322 5e-83 >seq44 Length=686090 Score = 322 bits (356), Expect = 5e-83 Identities = 609/882 (69%), Gaps = 32/882 (4%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| ||||| ||||| || | ||| |||| | || || || | |||| Sbjct 254444 TAAAAATCAGCATCTGTAGAAAATACTGT---GTCATTGTCA---ATCACTCCAACTTTT 254497 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC--AGTGATATATTTT 13641 |||||||| | |||| | |||||||||||||| ||||| || || || ||| |||| | Sbjct 254498 TGATATTCTCCAACTTTCTTTTCAAAGAAGTTTGTTTTTCCATCTGTAGAGAT-TATTGT 254556 Query 13642 CCATAAAATCAAATGGATTTATTGACATAAACACT-TTATCACAACCTAGTTCTAATAGT 13700 | || |||||||| ||||||| |||| | | | || ||||| || | |||| | | Sbjct 254557 C-ATGAAATCAAAAGGATTTACA-ACATTATAAATCTTCTCACACCCCAATTCTGTCAAT 254614 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13760 ||||||||||| | |||||||||||||||| ||||||| | ||||||||| || |||| Sbjct 254615 AATCTATCAGCCACAAACTCAATATATTGACACATTAATTTACAATTCATGCCAATTAAA 254674 Query 13761 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATA 13820 | || || | || || | ||||||| ||| || ||||| || || ||| Sbjct 254675 CTCACTGGTAAAGCATCAGTGAGGAATTCTTGTTCAATGATTACAGCATCGCGAATTATA 254734 Query 13821 ATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTA---AAAATTAAACACGCA 13877 |||| | | || || ||||| | || || | | | || |||||||| ||| Sbjct 254735 CTTGTCACTCTTTCCTTTGAAGGT---TTTTGTACAAGGTAGGAGAACATTAAACAAGCA 254791 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 |||||||| || || || ||||| || ||| | || |||||||| ||||| || ||| Sbjct 254792 AAATCACAGTGTAGACCTTCATCCCTTGAAATTAACTCATTTGAAAAGGTTAAGCCAGGC 254851 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 || | || | ||||| | ||| || ||||| ||||| || |||||||| || ||| Sbjct 254852 ATAAGACCCCTCTTTTTGAGCCAGAAAATTGCTGCAAAACTGCCAGAAAAGAAAATGCCC 254911 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057 ||||| |||||||| |||| | || || ||||| || || ||| | ||||| Sbjct 254912 TCAACAGCAGCAAAAGCTACAATTCTCTCACCAAAACTGGCATTCTTGCTGCTGATCCAG 254971 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 || |||||||||| || ||||||| | || | ||||||||| ||||| || | | Sbjct 254972 TTCAATGCCCATTCAGCCTTCTTTTTAACACAAGGTAATGTTTCAATGGCATTGAAAAGA 255031 Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 |||| || | | | | ||||| || ||||| || | ||| |||||||||||| Sbjct 255032 AATTCTTTTTGATCCGGATCACTGATGTAAGTTTCAATTAGCATGCTGTACATTTCAGAG 255091 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CGACCATTGTA 14235 || || || || || || || ||||| ||||||||||| |||||||| |||| || | Sbjct 255092 TGGATATTCTCAATGGCAATTTGAAATCCATAAAAGCACCTAGCTTCAGTGACC--TGCA 255149 Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 |||| | || | ||| | || || || || || ||||||||| || ||||| | Sbjct 255150 CTTCTTGGCTGAACCGTTCCACTAAGTTCTCGTTCACAATACCATCAGAGGCGGCAAAGA 255209 Query 14296 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGG 14352 | || | | || || ||| ||| |||||||| | || || ||||| | Sbjct 255210 AAGCAAGGACGTGGGAGATGAAG---TGCCTTTCATTGTCTGTTAGCTTGACCCAAT--G 255264 Query 14353 AT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 || | |||||| || | || ||||| || ||||||||| Sbjct 255265 ATCCAGATCCTTGGACAAGTCCACTTCTTCTGTTGTCCAAAA 255306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479709632414200