Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq44 309 3e-79 >seq44 Length=686090 Score = 309 bits (342), Expect = 3e-79 Identities = 604/880 (69%), Gaps = 28/880 (3%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| ||||| ||||| || | ||| |||| | || || || | |||| Sbjct 254444 TAAAAATCAGCATCTGTAGAAAATACTGT---GTCATTGTCA---ATCACTCCAACTTTT 254497 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC--AGTGATATATTTT 13429 |||||||| | |||| | |||||||| ||||| ||||| || || || ||| |||| | Sbjct 254498 TGATATTCTCCAACTTTCTTTTCAAAGAAGTTTGTTTTTCCATCTGTAGAGAT-TATTGT 254556 Query 13430 CCATAAAATCGAATGGATTTGTTGACATAAACACT-TTATCACAACCTAGTTCTAATAAT 13488 | || ||||| || |||||| |||| | | | || ||||| || | |||| ||| Sbjct 254557 C-ATGAAATCAAAAGGATTTACA-ACATTATAAATCTTCTCACACCCCAATTCTGTCAAT 254614 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13548 ||||||||||| | |||||||||||||||| ||||||| | ||||||||| || |||| Sbjct 254615 AATCTATCAGCCACAAACTCAATATATTGACACATTAATTTACAATTCATGCCAATTAAA 254674 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 | || || | || ||| | ||||||| ||| || ||||| ||| || ||| Sbjct 254675 CTCACTGGTAAAGCATCAGTGAGGAATTCTTGTTCAATGATTACAGCATCGCGAATTATA 254734 Query 13609 ATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTA---AAAATTAAACACGCA 13665 | | | | || || ||||| | || || | | | || |||||||| ||| Sbjct 254735 CTTGTCACTCTTTCCTTTGAAGGT---TTTTGTACAAGGTAGGAGAACATTAAACAAGCA 254791 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 |||||||| || || || ||||| || ||| | || |||||||| ||||| || ||| Sbjct 254792 AAATCACAGTGTAGACCTTCATCCCTTGAAATTAACTCATTTGAAAAGGTTAAGCCAGGC 254851 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || | || | ||||| | ||| || ||||| || || || |||||||| || ||| Sbjct 254852 ATAAGACCCCTCTTTTTGAGCCAGAAAATTGCTGCAAAACTGCCAGAAAAGAAAATGCCC 254911 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCAT 13845 ||||| |||||||| |||| | || || ||||| || || ||| | ||||| Sbjct 254912 TCAACAGCAGCAAAAGCTACAATTCTCTCACCAAAACTGGCATTCTTGCTGCTGATCCAG 254971 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || |||||||||| || ||||||| | || | |||||| || |||||||| | | Sbjct 254972 TTCAATGCCCATTCAGCCTTCTTTTTAACACAAGGTAATGTTTCAATGGCATTGAAAAGA 255031 Query 13906 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 ||| || | | | | ||||| || ||||| || | ||| |||||||||||| Sbjct 255032 AATTCTTTTTGATCCGGATCACTGATGTAAGTTTCAATTAGCATGCTGTACATTTCAGAG 255091 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTGTA 14023 || || || || || || || ||||| |||||||| || |||||||| ||||| || | Sbjct 255092 TGGATATTCTCAATGGCAATTTGAAATCCATAAAAGCACCTAGCTTCAGTGACC--TGCA 255149 Query 14024 CCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 | || | || | ||| | ||||| || || |||||||||||| || ||||| | Sbjct 255150 CTTCTTGGCTGAACCGTTCCACTAAGTTCTCGTTCACAATACCATCAGAGGCGGCAAAGA 255209 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGG 14140 | || | | || || ||| ||| |||||||| | || || ||||| Sbjct 255210 AAGCAAGGACGTGGGAGATGAAG---TGCCTTTCATTGTCTGTTAGCTTGACCCAATGAT 255266 Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 | | |||||| || | || ||||| || ||||||||| Sbjct 255267 CCAGATCCTTGGACAAGTCCACTTCTTCTGTTGTCCAAAA 255306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478570476031320